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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039833 through 18771 annotations produced 1 hits



(CG15564):

Annotation Number : CG15564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039833
Gbrowse : chr3R:27058341-27061003 (-) // 100.0 //
Probeset : 1627237_at
Accessions : protein= NP_651855;, nucleotide= NM_143598;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039833.
BioGrid reports that CG15564 interacts with CG4088 CG5701 CG17666 CG4337 Dmel CG34168 CG5320 CG5641 CG7945 CG8942 CG31094 .
VDRC has 3 RNAi stocks for FBgn0039833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 1.00None
Head2 ± 00 of 4 1.10None
Eye1 ± 00 of 4 0.88None
Thoracicoabdominal ganglion4 ± 20 of 4 2.30None
Salivary gland3 ± 00 of 4 1.74None
Crop2 ± 00 of 4 1.00None
Midgut1 ± 00 of 4 0.70None
Tubule3 ± 00 of 4 1.60Up
Hindgut3 ± 10 of 4 1.70None
Heart1 ± 00 of 4 0.90None
Fat body2 ± 00 of 4 1.20None
Ovary1 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.90None
Male accessory glands2 ± 00 of 4 1.40None
Virgin spermatheca1 ± 00 of 4 0.54None
Mated spermatheca1 ± 00 of 4 0.84None
Adult carcass9 ± 30 of 4 4.80None
Larval CNS2 ± 10 of 4 1.07None
Larval Salivary gland9 ± 40 of 4 4.57None
Larval midgut1 ± 00 of 4 0.64None
Larval tubule2 ± 00 of 4 1.30None
Larval hindgut1 ± 00 of 4 0.91None
Larval fat body1 ± 00 of 4 0.90None
Larval trachea1 ± 00 of 4 0.53None
Larval carcass2 ± 00 of 4 1.15None
S2 cells (growing)2 ± 00 of 4 1.36None
Whole fly2 ± 00 of 4

Looking for FBgn0039833. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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