FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039838 through 18771 annotations produced 1 hits

(CG3669):

Annotation Number : CG3669
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039838
Gbrowse : chr3R:27084670-27085754 (+) // 100.0 //
Probeset : 1641591_at
Accessions : protein= NP_001097987;, nucleotide= NM_001104517;
Interpro : 0004089 // carbonate dehydratase activity // inferred from sequence or structural similarity /// 0004089 // carbonate de
FlyMine data for FBgn0039838.
Homophila reports that CG3669 is a close match (7e-23) to human gene CA4;RP17 (NP_000708), a gene associated with Retinitis pigmentosa-17, 600852 (3).
VDRC has 1 RNAi stocks for FBgn0039838 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	1.30	None
Head	1 ± 0	0 of 4	1.70	None
Eye	1 ± 0	0 of 4	2.59	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	1.20	None
Salivary gland	2 ± 0	0 of 4	2.83	None
Crop	2 ± 0	0 of 4	2.70	None
Midgut	1 ± 0	0 of 4	1.80	None
Tubule	1 ± 0	0 of 4	2.20	Up
Hindgut	0 ± 0	0 of 4	0.80	None
Heart	0 ± 0	0 of 4	1.21	None
Fat body	1 ± 0	0 of 4	1.66	None
Ovary	0 ± 0	0 of 4	0.60	None
Testis	0 ± 0	0 of 4	0.90	None
Male accessory glands	18 ± 3	2 of 4	26.00	Up
Virgin spermatheca	1 ± 1	0 of 4	2.62	None
Mated spermatheca	0 ± 0	0 of 4	1.21	None
Adult carcass	1 ± 0	0 of 4	2.30	None
Larval CNS	0 ± 0	0 of 4	0.66	None
Larval Salivary gland	1 ± 0	0 of 4	1.41	None
Larval midgut	1 ± 0	0 of 4	1.55	None
Larval tubule	1 ± 0	0 of 4	2.20	None
Larval hindgut	1 ± 1	0 of 4	2.41	None
Larval fat body	4 ± 3	0 of 4	6.50	None
Larval trachea	0 ± 0	0 of 4	0.38	Down
Larval carcass	1 ± 0	0 of 4	1.79	None
S2 cells (growing)	0 ± 0	0 of 4	0.69	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0039838. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720