FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039840 through 18771 annotations produced 1 hits

(CG11340):

Annotation Number : CG11340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039840
Gbrowse : chr3R:27128571-27130804 (-) // 100.0 //
Probeset : 1638649_at
Accessions : protein= NP_651861;, nucleotide= NM_143604;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005230 // extracellular ligand-gated ion cha
FlyMine data for FBgn0039840.
Homophila reports that CG11340 is a close match (2e-24) to human gene CAE2;ECA2;GABRG2;GEFSP3 (NP_944493), a gene associated with Epilepsy, childhood absence, 2, 607681 (3);Epilepsy, generalized, with febrile seizures plus, type 3, 604233 (3);Febrile convulsions, familial, 8, 611277 (3);Myoclonic epilepsy, severe, of infancy, 607208 (3).
BioGrid reports that CG11340 interacts with CG2665 CG18627 CG3771 CG2668 .
TRiP has 1 RNAi stocks for FBgn0039840 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039840 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.20	None
Head	6 ± 1	0 of 4	0.40	None
Eye	3 ± 1	0 of 4	0.27	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.20	None
Salivary gland	6 ± 3	0 of 4	0.42	None
Crop	4 ± 1	0 of 4	0.30	None
Midgut	202 ± 9	4 of 4	13.80	Up
Tubule	183 ± 38	4 of 4	12.50	Up
Hindgut	3 ± 1	0 of 4	0.20	None
Heart	4 ± 0	0 of 4	0.31	None
Fat body	8 ± 2	1 of 4	0.60	None
Ovary	3 ± 1	0 of 4	0.20	None
Testis	2 ± 1	0 of 4	0.20	None
Male accessory glands	2 ± 1	0 of 4	0.20	None
Virgin spermatheca	4 ± 1	0 of 4	0.33	None
Mated spermatheca	2 ± 0	0 of 4	0.15	None
Adult carcass	1 ± 0	0 of 4	0.10	None
Larval CNS	4 ± 1	0 of 4	0.33	None
Larval Salivary gland	9 ± 1	0 of 4	0.67	None
Larval midgut	129 ± 2	4 of 4	8.81	Up
Larval tubule	120 ± 6	4 of 4	8.20	Up
Larval hindgut	11 ± 0	0 of 4	0.81	None
Larval fat body	5 ± 3	0 of 4	0.40	None
Larval trachea	1 ± 0	0 of 4	0.08	None
Larval carcass	2 ± 0	0 of 4	0.14	None
S2 cells (growing)	3 ± 0	0 of 4	0.22	None
Whole fly	14 ± 4	2 of 4

Looking for FBgn0039840. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720