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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039844 through 18771 annotations produced 2 hits



/// Triose phosphate isomerase (CG1607 /// Tpi):

Annotation Number : CG2171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086355
Gbrowse : chr3R:25958697-25960321 (-) // 100.0 //
Probeset : 1637816_s_at
Accessions : protein= NP_788764; /// NP_788765; /// NP_788766;, nucleotide= NM_176587; /// NM_176588; /// NM_176589;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004807 // triose-phosphate isomerase activity
FlyMine data for FBgn0086355.
Homophila reports that CG2171 is a close match (3e-86) to human gene TPI1 (NP_000356), a gene associated with Hemolytic anemia due to triosephosphate isomerase deficiency (3).
BioGrid reports that CG2171 interacts with CG4835 CG4865 .
TRiP has 1 RNAi stocks for FBgn0086355 available for purchase.
VDRC has 2 RNAi stocks for FBgn0086355 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1682 294 of 4 0.80Down
Head2415 334 of 4 1.10Up
Eye3169 1544 of 4 1.50Up
Thoracicoabdominal ganglion1763 144 of 4 0.80Down
Salivary gland5245 1934 of 4 2.48Up
Crop2642 1124 of 4 1.20Up
Midgut2233 1894 of 4 1.10None
Tubule2216 364 of 4 1.00Up
Hindgut3226 834 of 4 1.50Up
Heart3072 994 of 4 1.45Up
Fat body3386 3294 of 4 1.60Up
Ovary2048 554 of 4 1.00None
Testis1804 604 of 4 0.90Down
Male accessory glands676 164 of 4 0.30Down
Virgin spermatheca4059 2024 of 4 1.92Up
Mated spermatheca3927 1044 of 4 1.85Up
Adult carcass3219 1194 of 4 1.50Up
Larval CNS2000 1634 of 4 0.94None
Larval Salivary gland2524 1214 of 4 1.19Up
Larval midgut2387 1024 of 4 1.13None
Larval tubule1934 904 of 4 0.90None
Larval hindgut2037 64 of 4 0.96None
Larval fat body2362 3094 of 4 1.10None
Larval trachea2057 1064 of 4 0.97None
Larval carcass5079 4614 of 4 2.40Up
S2 cells (growing)1571 464 of 4 0.74Down
Whole fly2118 554 of 4



(CG1607):

Annotation Number : CG1607
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039844
Gbrowse : chr3R:27207831-27217622 (+) // 100.0 //
Probeset : 1626581_s_at
Accessions : protein= NP_651865; /// NP_733427;, nucleotide= NM_143608; /// NM_170548;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0039844.
Homophila reports that CG1607 is a close match (2e-83) to human gene CSNU3;SLC7A9 (NP_055085), a gene associated with Cystinuria, type II (3);Cystinuria, type III (3).
VDRC has 3 RNAi stocks for FBgn0039844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain596 74 of 4 6.70Up
Head363 134 of 4 4.10Up
Eye201 64 of 4 2.27Up
Thoracicoabdominal ganglion609 114 of 4 6.90Up
Salivary gland38 44 of 4 0.43Down
Crop241 144 of 4 2.70Up
Midgut69 34 of 4 0.80Down
Tubule46 34 of 4 0.50Down
Hindgut107 54 of 4 1.20None
Heart304 94 of 4 3.43Up
Fat body242 474 of 4 2.73Up
Ovary2 10 of 4 0.00Down
Testis8 14 of 4 0.10Down
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca167 144 of 4 1.88Up
Mated spermatheca144 184 of 4 1.62Up
Adult carcass203 74 of 4 2.30Up
Larval CNS1338 714 of 415.09Up
Larval Salivary gland453 564 of 4 5.11Up
Larval midgut63 34 of 4 0.71Down
Larval tubule207 94 of 4 2.30Up
Larval hindgut163 34 of 4 1.84Up
Larval fat body824 1804 of 4 9.30Up
Larval trachea196 184 of 4 2.22Up
Larval carcass190 264 of 4 2.15Up
S2 cells (growing)27 24 of 4 0.31Down
Whole fly88 64 of 4

Looking for FBgn0039844. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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