FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039849 through 18771 annotations produced 2 hits

(CG11334):

Annotation Number : HDC16583
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039849
Gbrowse : chr3R:27288311-27288836 (-) // 100.0 //
Probeset : 1640926_at
Accessions : protein= NP_651868; /// NP_733430;, nucleotide= NM_143611; /// NM_170551;
Pathway : 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity
Interpro : 0045182 // translation regulator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0039849.
BDGP gene expression has embryonic in situ data for CG11334: 19 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0039849 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.30	None
Head	1 ± 0	0 of 4	0.40	None
Eye	1 ± 0	0 of 4	0.60	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.30	None
Salivary gland	9 ± 4	0 of 4	3.39	None
Crop	1 ± 0	0 of 4	0.60	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	1 ± 0	0 of 4	0.70	None
Hindgut	1 ± 0	0 of 4	0.50	None
Heart	1 ± 1	0 of 4	0.56	None
Fat body	2 ± 0	0 of 4	0.75	None
Ovary	2 ± 1	0 of 4	1.00	None
Testis	0 ± 0	0 of 4	0.30	None
Male accessory glands	1 ± 0	0 of 4	0.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.52	None
Mated spermatheca	1 ± 0	0 of 4	0.58	None
Adult carcass	2 ± 1	0 of 4	0.90	None
Larval CNS	1 ± 1	0 of 4	0.49	None
Larval Salivary gland	2 ± 0	0 of 4	0.96	None
Larval midgut	2 ± 1	0 of 4	0.74	None
Larval tubule	3 ± 1	0 of 4	1.40	None
Larval hindgut	0 ± 0	0 of 4	0.24	None
Larval fat body	4 ± 2	0 of 4	1.50	None
Larval trachea	1 ± 1	0 of 4	0.64	None
Larval carcass	1 ± 0	0 of 4	0.48	None
S2 cells (growing)	1 ± 0	0 of 4	0.51	None
Whole fly	2 ± 1	0 of 4

(CG11334):

Annotation Number : CG11334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039849
Gbrowse : chr3R:27285545-27288730 (-) // 100.0 //
Probeset : 1624246_s_at
Accessions : protein= NP_651868; /// NP_733430;, nucleotide= NM_143611; /// NM_170551;
Pathway : 0005851 // eukaryotic translation initiation factor 2B complex // inferred from sequence or structural similarity
Interpro : 0045182 // translation regulator activity // inferred from sequence or structural similarity
FlyMine data for FBgn0039849.
BDGP gene expression has embryonic in situ data for CG11334: 19 pix of staining in 4 body parts.
Homophila reports that CG11334 is a close match (4e-15) to human gene EIF2B1;EIF2BA (NP_001405), a gene associated with Leukoencephalopathy with vanishing white matter, 603896 (3).
BioGrid reports that CG11334 interacts with CG13389 CG1871 CG6963 CG7977 .
VDRC has 3 RNAi stocks for FBgn0039849 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	55 ± 1	4 of 4	0.20	Down
Head	150 ± 14	4 of 4	0.60	Down
Eye	163 ± 4	4 of 4	0.67	Down
Thoracicoabdominal ganglion	72 ± 3	4 of 4	0.30	Down
Salivary gland	179 ± 14	4 of 4	0.74	Down
Crop	137 ± 8	4 of 4	0.60	Down
Midgut	273 ± 17	4 of 4	1.10	None
Tubule	2290 ± 144	4 of 4	9.40	Up
Hindgut	213 ± 4	4 of 4	0.90	Down
Heart	243 ± 12	4 of 4	1.00	None
Fat body	348 ± 28	4 of 4	1.43	Up
Ovary	319 ± 4	4 of 4	1.30	Up
Testis	116 ± 4	4 of 4	0.50	Down
Male accessory glands	196 ± 10	4 of 4	0.80	Down
Virgin spermatheca	195 ± 12	4 of 4	0.80	Down
Mated spermatheca	269 ± 16	4 of 4	1.11	None
Adult carcass	274 ± 19	4 of 4	1.10	None
Larval CNS	232 ± 14	4 of 4	0.96	None
Larval Salivary gland	167 ± 15	4 of 4	0.69	Down
Larval midgut	264 ± 8	4 of 4	1.08	None
Larval tubule	1486 ± 73	4 of 4	6.10	Up
Larval hindgut	256 ± 7	4 of 4	1.05	None
Larval fat body	639 ± 44	4 of 4	2.60	Up
Larval trachea	310 ± 26	4 of 4	1.28	Up
Larval carcass	157 ± 6	4 of 4	0.65	Down
S2 cells (growing)	345 ± 18	4 of 4	1.42	Up
Whole fly	243 ± 9	4 of 4

Looking for FBgn0039849. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720