FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039850 through 18771 annotations produced 1 hits

(CG11333):

Annotation Number : CG11333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039850
Gbrowse : chr3R:27289066-27289805 (+) // 100.0 //
Probeset : 1636329_at
Accessions : protein= NP_651869;, nucleotide= NM_143612;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0039850.
BDGP gene expression has embryonic in situ data for CG11333: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039850 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	0 of 4	0.20	Down
Head	5 ± 1	1 of 4	0.20	Down
Eye	3 ± 0	0 of 4	0.11	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.20	Down
Salivary gland	12 ± 4	1 of 4	0.45	Down
Crop	2 ± 0	0 of 4	0.10	Down
Midgut	15 ± 2	2 of 4	0.60	Down
Tubule	86 ± 7	4 of 4	3.10	Up
Hindgut	8 ± 1	1 of 4	0.30	Down
Heart	5 ± 0	1 of 4	0.18	Down
Fat body	9 ± 1	1 of 4	0.32	Down
Ovary	3 ± 0	0 of 4	0.10	Down
Testis	272 ± 12	4 of 4	9.70	Up
Male accessory glands	7 ± 1	1 of 4	0.30	Down
Virgin spermatheca	5 ± 1	1 of 4	0.18	Down
Mated spermatheca	6 ± 0	0 of 4	0.23	Down
Adult carcass	6 ± 3	0 of 4	0.20	Down
Larval CNS	4 ± 1	2 of 4	0.16	Down
Larval Salivary gland	7 ± 2	1 of 4	0.28	Down
Larval midgut	7 ± 2	0 of 4	0.26	Down
Larval tubule	53 ± 9	4 of 4	1.90	None
Larval hindgut	8 ± 0	1 of 4	0.30	Down
Larval fat body	35 ± 12	4 of 4	1.30	None
Larval trachea	6 ± 3	1 of 4	0.23	Down
Larval carcass	7 ± 1	0 of 4	0.26	Down
S2 cells (growing)	6 ± 1	0 of 4	0.22	Down
Whole fly	28 ± 3	4 of 4

Looking for FBgn0039850. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720