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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039854 through 18771 annotations produced 1 hits



(CG1635):

Annotation Number : CG1635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039854
Gbrowse : chr3R:27414389-27416111 (+) // 100.0 //
Probeset : 1639484_at
Accessions : protein= NP_651873;, nucleotide= NM_143616;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039854.
BDGP gene expression has embryonic in situ data for CG1635: 4 pix of staining in 1 body parts.
BioGrid reports that CG1635 interacts with CG5840 CG8529 CG1638 CG2099 CG30085 CG5303 CG5608 CG6157 CG6743 CG7810 .
VDRC has 3 RNAi stocks for FBgn0039854 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 ± 94 of 4 2.90Up
Head189 ± 54 of 4 1.60Up
Eye182 ± 94 of 4 1.57Up
Thoracicoabdominal ganglion395 ± 74 of 4 3.40Up
Salivary gland333 ± 94 of 4 2.85Up
Crop264 ± 34 of 4 2.30Up
Midgut178 ± 14 of 4 1.50Up
Tubule252 ± 84 of 4 2.20Up
Hindgut309 ± 104 of 4 2.70Up
Heart225 ± 64 of 4 1.93Up
Fat body210 ± 174 of 4 1.80Up
Ovary148 ± 54 of 4 1.30Up
Testis25 ± 14 of 4 0.20Down
Male accessory glands99 ± 34 of 4 0.90None
Virgin spermatheca167 ± 64 of 4 1.43Up
Mated spermatheca186 ± 34 of 4 1.59Up
Adult carcass164 ± 44 of 4 1.40Up
Larval CNS172 ± 174 of 4 1.48Up
Larval Salivary gland107 ± 24 of 4 0.92None
Larval midgut134 ± 34 of 4 1.16None
Larval tubule228 ± 104 of 4 2.00Up
Larval hindgut236 ± 64 of 4 2.03Up
Larval fat body70 ± 54 of 4 0.60Down
Larval trachea153 ± 164 of 4 1.32Up
Larval carcass166 ± 134 of 4 1.43Up
S2 cells (growing)179 ± 44 of 4 1.54Up
Whole fly116 ± 74 of 4

Looking for FBgn0039854. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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