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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039855 through 18771 annotations produced 1 hits



(CG1638):

Annotation Number : CG1638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039855
Gbrowse : chr3R:27416618-27417840 (+) // 100.0 //
Probeset : 1627957_at
Accessions : protein= NP_001097991;, nucleotide= NM_001104521;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016291 // acyl-CoA thioesterase activity // inferr
FlyMine data for FBgn0039855.
BioGrid reports that CG1638 interacts with CG31961 CG7878 .
VDRC has 4 RNAi stocks for FBgn0039855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 00 of 4 0.50Down
Head9 ± 20 of 4 0.30Down
Eye6 ± 20 of 4 0.19Down
Thoracicoabdominal ganglion24 ± 10 of 4 0.80None
Salivary gland20 ± 60 of 4 0.65None
Crop20 ± 30 of 4 0.60None
Midgut11 ± 30 of 4 0.40Down
Tubule20 ± 20 of 4 0.70Down
Hindgut24 ± 10 of 4 0.80None
Heart8 ± 00 of 4 0.28Down
Fat body13 ± 20 of 4 0.42Down
Ovary6 ± 10 of 4 0.20Down
Testis338 ± 284 of 410.70Up
Male accessory glands16 ± 40 of 4 0.50Down
Virgin spermatheca20 ± 30 of 4 0.65Down
Mated spermatheca27 ± 61 of 4 0.87None
Adult carcass12 ± 30 of 4 0.40Down
Larval CNS19 ± 20 of 4 0.61Down
Larval Salivary gland13 ± 20 of 4 0.44Down
Larval midgut17 ± 20 of 4 0.56Down
Larval tubule9 ± 20 of 4 0.30Down
Larval hindgut16 ± 30 of 4 0.53Down
Larval fat body33 ± 161 of 4 1.10None
Larval trachea7 ± 40 of 4 0.25Down
Larval carcass12 ± 30 of 4 0.38Down
S2 cells (growing)8 ± 10 of 4 0.28Down
Whole fly31 ± 23 of 4

Looking for FBgn0039855. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime