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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039856 through 18771 annotations produced 1 hits



(CG1774):

Annotation Number : CG1774
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039856
Gbrowse : chr3R:27418465-27420449 (+) // 100.0 //
Probeset : 1628758_at
Accessions : protein= NP_651875;, nucleotide= NM_143618;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from
FlyMine data for FBgn0039856.
BDGP gene expression has embryonic in situ data for CG1774: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0039856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.10Down
Head172 144 of 4 1.40Up
Eye42 84 of 4 0.35Down
Thoracicoabdominal ganglion13 21 of 4 0.10Down
Salivary gland73 34 of 4 0.60Down
Crop66 74 of 4 0.60Down
Midgut144 44 of 4 1.20None
Tubule365 274 of 4 3.00Up
Hindgut120 34 of 4 1.00None
Heart267 94 of 4 2.20Up
Fat body550 334 of 4 4.54Up
Ovary48 44 of 4 0.40Down
Testis165 54 of 4 1.40Up
Male accessory glands180 74 of 4 1.50Up
Virgin spermatheca493 534 of 4 4.07Up
Mated spermatheca336 344 of 4 2.77Up
Adult carcass418 194 of 4 3.50Up
Larval CNS3 10 of 4 0.03Down
Larval Salivary gland5 10 of 4 0.05Down
Larval midgut24 40 of 4 0.20Down
Larval tubule176 154 of 4 1.50Up
Larval hindgut9 21 of 4 0.08Down
Larval fat body92 204 of 4 0.80None
Larval trachea6 22 of 4 0.05Down
Larval carcass4 10 of 4 0.03Down
S2 cells (growing)6 10 of 4 0.06Down
Whole fly121 114 of 4

Looking for FBgn0039856. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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