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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039857 through 18771 annotations produced 1 hits



Ribosomal protein L6 (RpL6):

Annotation Number : CG11522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039857
Gbrowse : chr3R:27420508-27421967 (-) // 100.0 //
Probeset : 1641355_a_at
Accessions : protein= NP_651876; /// NP_733433;, nucleotide= NM_143619; /// NM_170554;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation
FlyMine data for FBgn0039857.
BDGP gene expression has embryonic in situ data for CG11522: 8 pix of staining in 1 body parts.
BioGrid reports that CG11522 interacts with CG13576 CG30327 CG5078 CG7202 CG8539 .
TRiP has 1 RNAi stocks for FBgn0039857 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039857 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2496 434 of 4 0.70Down
Head3758 694 of 4 1.10Up
Eye5733 524 of 4 1.70Up
Thoracicoabdominal ganglion3969 1294 of 4 1.20Up
Salivary gland13487 8694 of 4 4.01Up
Crop5676 2694 of 4 1.70Up
Midgut4500 804 of 4 1.30Up
Tubule3673 314 of 4 1.10Up
Hindgut4631 1254 of 4 1.40Up
Heart6042 3614 of 4 1.80Up
Fat body5803 5624 of 4 1.72Up
Ovary3036 94 of 4 0.90Down
Testis879 204 of 4 0.30Down
Male accessory glands9100 3254 of 4 2.70Up
Virgin spermatheca5377 2334 of 4 1.60Up
Mated spermatheca5356 754 of 4 1.59Up
Adult carcass5561 2024 of 4 1.70Up
Larval CNS2849 2664 of 4 0.85Down
Larval Salivary gland7802 4254 of 4 2.32Up
Larval midgut4214 934 of 4 1.25Up
Larval tubule4355 694 of 4 1.30Up
Larval hindgut4274 284 of 4 1.27Up
Larval fat body6635 7494 of 4 2.00Up
Larval trachea5670 1754 of 4 1.69Up
Larval carcass4823 2384 of 4 1.43Up
S2 cells (growing)4944 734 of 4 1.47Up
Whole fly3364 924 of 4

Looking for FBgn0039857. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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