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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039868 through 18771 annotations produced 1 hits



(CG11563):

Annotation Number : CG11563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039868
Gbrowse : chr3R:27562763-27563621 (+) // 100.0 //
Probeset : 1635931_at
Accessions : protein= NP_651884;, nucleotide= NM_143627;
FlyMine data for FBgn0039868.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 24 of 4 0.50Down
Head92 24 of 4 0.50Down
Eye109 44 of 4 0.57Down
Thoracicoabdominal ganglion80 04 of 4 0.40Down
Salivary gland65 14 of 4 0.34Down
Crop92 34 of 4 0.50Down
Midgut60 44 of 4 0.30Down
Tubule65 114 of 4 0.30Down
Hindgut58 14 of 4 0.30Down
Heart55 04 of 4 0.28Down
Fat body77 64 of 4 0.40Down
Ovary390 84 of 4 2.00Up
Testis31 24 of 4 0.20Down
Male accessory glands162 134 of 4 0.80None
Virgin spermatheca73 44 of 4 0.38Down
Mated spermatheca112 14 of 4 0.58Down
Adult carcass62 74 of 4 0.30Down
Larval CNS201 44 of 4 1.04None
Larval Salivary gland119 114 of 4 0.62Down
Larval midgut47 44 of 4 0.24Down
Larval tubule24 14 of 4 0.10Down
Larval hindgut72 104 of 4 0.37Down
Larval fat body31 34 of 4 0.20Down
Larval trachea174 494 of 4 0.90None
Larval carcass123 314 of 4 0.64None
S2 cells (growing)189 34 of 4 0.98None
Whole fly193 94 of 4

Looking for FBgn0039868. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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