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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039869 through 18771 annotations produced 1 hits



(CG1890):

Annotation Number : CG1890
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039869
Gbrowse : chr3R:27569227-27569970 (+) // 100.0 //
Probeset : 1630724_at
Accessions : protein= NP_651885;, nucleotide= NM_143628;
Pathway : 0005874 // microtubule // inferred from electronic annotation
Interpro : 0051082 // unfolded protein binding // inferred from electronic annotation
FlyMine data for FBgn0039869.
BioGrid reports that CG1890 interacts with CG9326 .
TRiP has 1 RNAi stocks for FBgn0039869 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 54 of 4 0.40Down
Head127 64 of 4 0.40Down
Eye143 54 of 4 0.46Down
Thoracicoabdominal ganglion203 34 of 4 0.60Down
Salivary gland36 81 of 4 0.12Down
Crop170 54 of 4 0.50Down
Midgut283 114 of 4 0.90None
Tubule239 84 of 4 0.80Down
Hindgut146 44 of 4 0.50Down
Heart237 244 of 4 0.75Down
Fat body121 184 of 4 0.39Down
Ovary548 54 of 4 1.70Up
Testis435 74 of 4 1.40Up
Male accessory glands93 94 of 4 0.30Down
Virgin spermatheca132 54 of 4 0.42Down
Mated spermatheca137 84 of 4 0.44Down
Adult carcass127 44 of 4 0.40Down
Larval CNS413 74 of 4 1.31Up
Larval Salivary gland201 44 of 4 0.64Down
Larval midgut418 144 of 4 1.33Up
Larval tubule207 124 of 4 0.70Down
Larval hindgut387 104 of 4 1.23Up
Larval fat body335 64 of 4 1.10None
Larval trachea1064 874 of 4 3.38Up
Larval carcass361 174 of 4 1.15None
S2 cells (growing)1742 414 of 4 5.54Up
Whole fly314 144 of 4

Looking for FBgn0039869. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime