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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039870 through 18771 annotations produced 1 hits



(CG1896):

Annotation Number : CG1896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039870
Gbrowse : chr3R:27570008-27570902 (+) // 100.0 //
Probeset : 1625963_at
Accessions : protein= NP_651886;, nucleotide= NM_143629;
FlyMine data for FBgn0039870.
BDGP gene expression has embryonic in situ data for CG1896: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 44 of 4 0.60Down
Head138 34 of 4 0.60Down
Eye141 34 of 4 0.64Down
Thoracicoabdominal ganglion119 14 of 4 0.50Down
Salivary gland105 74 of 4 0.48Down
Crop106 44 of 4 0.50Down
Midgut45 44 of 4 0.20Down
Tubule164 74 of 4 0.70Down
Hindgut101 34 of 4 0.50Down
Heart130 04 of 4 0.59Down
Fat body130 74 of 4 0.59Down
Ovary377 34 of 4 1.70Up
Testis32 14 of 4 0.10Down
Male accessory glands287 134 of 4 1.30Up
Virgin spermatheca144 64 of 4 0.66Down
Mated spermatheca159 24 of 4 0.72Down
Adult carcass102 54 of 4 0.50Down
Larval CNS291 74 of 4 1.32Up
Larval Salivary gland233 84 of 4 1.06None
Larval midgut56 24 of 4 0.26Down
Larval tubule169 64 of 4 0.80Down
Larval hindgut117 34 of 4 0.53Down
Larval fat body195 174 of 4 0.90None
Larval trachea149 164 of 4 0.68Down
Larval carcass126 64 of 4 0.57Down
S2 cells (growing)289 54 of 4 1.32Up
Whole fly220 114 of 4

Looking for FBgn0039870. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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