FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039872 through 18771 annotations produced 1 hits

salty dog (salt):

Annotation Number : CG2196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039872
Gbrowse : chr3R:27577538-27580413 (-) // 99.62 //
Probeset : 1633002_at
Accessions : protein= NP_651889;, nucleotide= NM_143632;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008507 // sodium:iodide symporter activity /
FlyMine data for FBgn0039872.
Homophila reports that CG2196 is a close match (8e-71) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 3 RNAi stocks for FBgn0039872 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 0	0 of 4	0.00	Down
Head	3 ± 1	0 of 4	0.00	Down
Eye	1 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.00	Down
Salivary gland	12 ± 4	0 of 4	0.04	Down
Crop	7 ± 3	0 of 4	0.00	Down
Midgut	8 ± 2	0 of 4	0.00	Down
Tubule	7247 ± 200	4 of 4	26.30	Up
Hindgut	70 ± 6	4 of 4	0.30	Down
Heart	12 ± 3	1 of 4	0.04	Down
Fat body	21 ± 24	1 of 4	0.08	Down
Ovary	4 ± 1	0 of 4	0.00	Down
Testis	6 ± 1	0 of 4	0.00	Down
Male accessory glands	10 ± 1	0 of 4	0.00	Down
Virgin spermatheca	15 ± 9	1 of 4	0.06	Down
Mated spermatheca	9 ± 1	0 of 4	0.04	Down
Adult carcass	20 ± 5	0 of 4	0.10	Down
Larval CNS	17 ± 5	4 of 4	0.06	Down
Larval Salivary gland	10 ± 2	0 of 4	0.04	Down
Larval midgut	10 ± 3	0 of 4	0.04	Down
Larval tubule	4099 ± 381	4 of 4	14.90	Up
Larval hindgut	85 ± 8	4 of 4	0.31	Down
Larval fat body	5 ± 2	0 of 4	0.00	Down
Larval trachea	4 ± 2	0 of 4	0.01	Down
Larval carcass	2 ± 0	0 of 4	0.01	Down
S2 cells (growing)	7 ± 2	0 of 4	0.03	Down
Whole fly	275 ± 23	4 of 4

Looking for FBgn0039872. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720