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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039873 through 18771 annotations produced 1 hits


CG2191 (Smvt):

Annotation Number : CG2191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039873
Gbrowse : chr3R:27585237-27587299 (-) // 100.0 //
Probeset : 1633425_at
Accessions : protein= NP_651891;, nucleotide= NM_143634;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008523 // sodium-dependent multivitamin tran
FlyMine data for FBgn0039873.
BDGP gene expression has embryonic in situ data for CG2191: 15 pix of staining in 3 body parts.
Homophila reports that CG2191 is a close match (1e-71) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 2 RNAi stocks for FBgn0039873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule5508 ± 2474 of 427.80Up
Hindgut199 ± 274 of 4 1.00None
Heart6 ± 11 of 4 0.03Down
Fat body4 ± 20 of 4 0.02Down
Ovary2 ± 10 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca4 ± 21 of 4 0.02Down
Mated spermatheca5 ± 10 of 4 0.03Down
Adult carcass11 ± 10 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.02Down
Larval midgut1 ± 00 of 4 0.01Down
Larval tubule357 ± 254 of 4 1.80Up
Larval hindgut16 ± 64 of 4 0.08Down
Larval fat body4 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass6 ± 10 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly198 ± 134 of 4

Looking for FBgn0039873. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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