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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039874 through 18771 annotations produced 1 hits



(CG2135):

Annotation Number : CG2135
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039874
Gbrowse : chr3R:27595013-27597575 (-) // 100.0 //
Probeset : 1634412_at
Accessions : protein= NP_651893;, nucleotide= NM_143636;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0039874.
Homophila reports that CG2135 is a close match (1e-130) to human gene GUSB;MPS7 (NP_000172), a gene associated with Mucopolysaccharidosis VII, 253220 (3).
VDRC has 3 RNAi stocks for FBgn0039874 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 34 of 4 1.50Up
Head42 ± 64 of 4 1.30None
Eye23 ± 24 of 4 0.70None
Thoracicoabdominal ganglion53 ± 34 of 4 1.60Up
Salivary gland64 ± 104 of 4 1.97Up
Crop39 ± 24 of 4 1.20None
Midgut61 ± 44 of 4 1.90Up
Tubule112 ± 134 of 4 3.40Up
Hindgut53 ± 24 of 4 1.60Up
Heart69 ± 54 of 4 2.10Up
Fat body48 ± 24 of 4 1.49Up
Ovary43 ± 24 of 4 1.30None
Testis32 ± 14 of 4 1.00None
Male accessory glands116 ± 74 of 4 3.60Up
Virgin spermatheca53 ± 24 of 4 1.64Up
Mated spermatheca36 ± 24 of 4 1.10None
Adult carcass53 ± 34 of 4 1.60Up
Larval CNS76 ± 64 of 4 2.33Up
Larval Salivary gland46 ± 44 of 4 1.40None
Larval midgut57 ± 34 of 4 1.74Up
Larval tubule150 ± 34 of 4 4.60Up
Larval hindgut42 ± 14 of 4 1.30None
Larval fat body137 ± 144 of 4 4.20Up
Larval trachea52 ± 114 of 4 1.60Up
Larval carcass34 ± 44 of 4 1.04None
S2 cells (growing)155 ± 34 of 4 4.72Up
Whole fly32 ± 44 of 4

Looking for FBgn0039874. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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