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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039877 through 18771 annotations produced 1 hits



3-methyl-crotonyl-CoA carboxylase (CG2118):

Annotation Number : CG2118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039877
Gbrowse : chr3R:27616667-27619628 (-) // 100.0 //
Probeset : 1635616_a_at
Accessions : protein= NP_651896; /// NP_733456;, nucleotide= NM_143639; /// NM_170577;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004485 // methylcrotonoyl-CoA carboxylase acti
FlyMine data for FBgn0039877.
BDGP gene expression has embryonic in situ data for CG2118: 4 pix of staining in 1 body parts.
Homophila reports that CG2118 is a close match (5e-78) to human gene PC (NP_071504), a gene associated with Pyruvate carboxylase deficiency, 266150 (3).
TRiP has 2 RNAi stocks for FBgn0039877 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 04 of 4 0.10Down
Head97 54 of 4 0.60Down
Eye41 34 of 4 0.24Down
Thoracicoabdominal ganglion22 24 of 4 0.10Down
Salivary gland86 44 of 4 0.50Down
Crop67 34 of 4 0.40Down
Midgut61 34 of 4 0.40Down
Tubule690 594 of 4 4.00Up
Hindgut110 14 of 4 0.60Down
Heart223 114 of 4 1.30Up
Fat body368 124 of 4 2.15Up
Ovary307 34 of 4 1.80Up
Testis123 144 of 4 0.70Down
Male accessory glands39 24 of 4 0.20Down
Virgin spermatheca140 84 of 4 0.82Down
Mated spermatheca129 74 of 4 0.75Down
Adult carcass189 64 of 4 1.10None
Larval CNS106 84 of 4 0.62Down
Larval Salivary gland288 74 of 4 1.68Up
Larval midgut73 14 of 4 0.43Down
Larval tubule109 64 of 4 0.60Down
Larval hindgut257 144 of 4 1.50Up
Larval fat body81 44 of 4 0.50Down
Larval trachea173 174 of 4 1.01None
Larval carcass183 214 of 4 1.07None
S2 cells (growing)68 34 of 4 0.40Down
Whole fly171 34 of 4

Looking for FBgn0039877. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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