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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039881 through 18771 annotations produced 1 hits



(CG1971):

Annotation Number : CG1971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039881
Gbrowse : chr3R:27631189-27632463 (+) // 99.65 //
Probeset : 1639193_a_at
Accessions : protein= NP_651900; /// NP_733457;, nucleotide= NM_143643; /// NM_170578;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039881.
BDGP gene expression has embryonic in situ data for CG1971: 4 pix of staining in 1 body parts.
BioGrid reports that CG1971 interacts with CG2678 .
VDRC has 2 RNAi stocks for FBgn0039881 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 12 of 4 0.10Down
Head15 ± 24 of 4 0.20Down
Eye10 ± 32 of 4 0.15Down
Thoracicoabdominal ganglion9 ± 10 of 4 0.10Down
Salivary gland45 ± 32 of 4 0.64Down
Crop22 ± 14 of 4 0.30Down
Midgut17 ± 20 of 4 0.30Down
Tubule11 ± 01 of 4 0.20Down
Hindgut43 ± 34 of 4 0.60Down
Heart54 ± 14 of 4 0.76Down
Fat body53 ± 104 of 4 0.75Down
Ovary25 ± 14 of 4 0.40Down
Testis779 ± 264 of 410.90Up
Male accessory glands42 ± 34 of 4 0.60Down
Virgin spermatheca25 ± 44 of 4 0.36Down
Mated spermatheca27 ± 34 of 4 0.38Down
Adult carcass39 ± 23 of 4 0.60Down
Larval CNS7 ± 21 of 4 0.11Down
Larval Salivary gland7 ± 20 of 4 0.10Down
Larval midgut8 ± 00 of 4 0.11Down
Larval tubule12 ± 11 of 4 0.20Down
Larval hindgut13 ± 14 of 4 0.19Down
Larval fat body87 ± 224 of 4 1.20None
Larval trachea7 ± 21 of 4 0.10Down
Larval carcass5 ± 10 of 4 0.07Down
S2 cells (growing)36 ± 14 of 4 0.52Down
Whole fly71 ± 34 of 4

Looking for FBgn0039881. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime