FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039882 through 18771 annotations produced 1 hits

(CG11576):

Annotation Number : CG11576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039882
Gbrowse : chr3R:27632587-27635907 (-) // 100.0 //
Probeset : 1634197_at
Accessions : protein= NP_651901;, nucleotide= NM_143644;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039882.
BDGP gene expression has embryonic in situ data for CG11576: 18 pix of staining in 9 body parts.
BioGrid reports that CG11576 interacts with CG7910 .
TRiP has 1 RNAi stocks for FBgn0039882 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039882 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	234 ± 7	4 of 4	2.10	Up
Head	143 ± 9	4 of 4	1.30	None
Eye	98 ± 6	4 of 4	0.88	None
Thoracicoabdominal ganglion	262 ± 1	4 of 4	2.30	Up
Salivary gland	76 ± 2	4 of 4	0.68	Down
Crop	255 ± 13	4 of 4	2.30	Up
Midgut	324 ± 15	4 of 4	2.90	Up
Tubule	1017 ± 87	4 of 4	9.00	Up
Hindgut	443 ± 10	4 of 4	3.90	Up
Heart	74 ± 3	4 of 4	0.67	Down
Fat body	80 ± 10	4 of 4	0.72	Down
Ovary	111 ± 2	4 of 4	1.00	None
Testis	117 ± 8	4 of 4	1.00	None
Male accessory glands	47 ± 5	4 of 4	0.40	Down
Virgin spermatheca	169 ± 12	4 of 4	1.51	Up
Mated spermatheca	172 ± 10	4 of 4	1.53	Up
Adult carcass	116 ± 2	4 of 4	1.00	None
Larval CNS	162 ± 36	4 of 4	1.44	None
Larval Salivary gland	32 ± 3	4 of 4	0.29	Down
Larval midgut	320 ± 16	4 of 4	2.84	Up
Larval tubule	95 ± 8	4 of 4	0.80	None
Larval hindgut	123 ± 9	4 of 4	1.09	None
Larval fat body	336 ± 42	4 of 4	3.00	Up
Larval trachea	71 ± 8	4 of 4	0.63	Down
Larval carcass	72 ± 6	4 of 4	0.65	Down
S2 cells (growing)	78 ± 2	4 of 4	0.70	Down
Whole fly	112 ± 10	4 of 4

Looking for FBgn0039882. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720