Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039883 through 18771 annotations produced 1 hits



RhoGAP100F (RhoGAP100F):

Annotation Number : CG1976
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039883
Gbrowse : chr3R:27658598-27670977 (+) // 99.96 //
Probeset : 1630285_at
Accessions : protein= NP_001163785; /// NP_001163786; /// NP_651902;, nucleotide= NM_001170314; /// NM_001170315; /// NM_143645;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from sequence or structural similarity /// 0005096 // GTPase activator
FlyMine data for FBgn0039883.
Homophila reports that CG1976 is a close match (1e-13) to human gene ARHGAP26;GRAF (NP_055886), a gene associated with Leukemia, juvenile myelomonocytic, 607785 (3).
TRiP has 1 RNAi stocks for FBgn0039883 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039883 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain800 ± 244 of 451.90Up
Head91 ± 104 of 4 6.00Up
Eye51 ± 34 of 4 3.37Up
Thoracicoabdominal ganglion556 ± 154 of 436.10Up
Salivary gland8 ± 21 of 4 0.57None
Crop6 ± 10 of 4 0.40Down
Midgut2 ± 10 of 4 0.20Down
Tubule5 ± 01 of 4 0.30Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.13Down
Fat body11 ± 63 of 4 0.71None
Ovary3 ± 10 of 4 0.20Down
Testis2 ± 10 of 4 0.20Down
Male accessory glands10 ± 32 of 4 0.70None
Virgin spermatheca13 ± 24 of 4 0.90None
Mated spermatheca13 ± 33 of 4 0.88None
Adult carcass8 ± 10 of 4 0.60Down
Larval CNS662 ± 954 of 442.99Up
Larval Salivary gland3 ± 10 of 4 0.20Down
Larval midgut2 ± 00 of 4 0.16Down
Larval tubule5 ± 12 of 4 0.30Down
Larval hindgut4 ± 11 of 4 0.27Down
Larval fat body5 ± 21 of 4 0.40Down
Larval trachea3 ± 20 of 4 0.22Down
Larval carcass5 ± 11 of 4 0.35Down
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly15 ± 14 of 4

Looking for FBgn0039883. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime