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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039886 through 18771 annotations produced 1 hits



(CG2003):

Annotation Number : CG2003
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039886
Gbrowse : chr3R:27803851-27816633 (+) // 99.71 //
Probeset : 1638008_s_at
Accessions : protein= NP_651903; /// NP_733463;, nucleotide= NM_143646; /// NM_170584;
Interpro : 0005316 // high affinity inorganic phosphate:sodium symporter activity // inferred from sequence or structural similarit
FlyMine data for FBgn0039886.
BDGP gene expression has embryonic in situ data for CG2003: 15 pix of staining in 11 body parts.
Homophila reports that CG2003 is a close match (4e-43) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
VDRC has 1 RNAi stocks for FBgn0039886 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 24 of 4 0.20Down
Head50 ± 34 of 4 1.00None
Eye39 ± 44 of 4 0.82None
Thoracicoabdominal ganglion9 ± 22 of 4 0.20Down
Salivary gland9 ± 30 of 4 0.20Down
Crop45 ± 44 of 4 0.90None
Midgut30 ± 24 of 4 0.60Down
Tubule6 ± 10 of 4 0.10Down
Hindgut35 ± 24 of 4 0.70Down
Heart52 ± 34 of 4 1.10None
Fat body86 ± 184 of 4 1.80Up
Ovary51 ± 44 of 4 1.10None
Testis22 ± 14 of 4 0.50Down
Male accessory glands180 ± 64 of 4 3.70Up
Virgin spermatheca115 ± 94 of 4 2.40Up
Mated spermatheca144 ± 64 of 4 2.99Up
Adult carcass96 ± 74 of 4 2.00Up
Larval CNS10 ± 24 of 4 0.21Down
Larval Salivary gland50 ± 174 of 4 1.06None
Larval midgut96 ± 14 of 4 2.00Up
Larval tubule31 ± 24 of 4 0.70Down
Larval hindgut103 ± 44 of 4 2.15Up
Larval fat body71 ± 104 of 4 1.50None
Larval trachea35 ± 34 of 4 0.74Down
Larval carcass86 ± 24 of 4 1.80Up
S2 cells (growing)16 ± 14 of 4 0.35Down
Whole fly48 ± 24 of 4

Looking for FBgn0039886. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime