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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039889 through 18771 annotations produced 1 hits



(CG2219):

Annotation Number : CG2219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039889
Gbrowse : chr4:198057-199980 (-) // 100.0 //
Probeset : 1636935_at
Accessions : protein= NP_651905;, nucleotide= NM_143648;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0039889.
BDGP gene expression has embryonic in situ data for CG2219: 2 pix of staining in 1 body parts.
Homophila reports that CG2219 is a close match (9e-18) to human gene ARL13B;ARL2L1;JBTS8 (NP_878899), a gene associated with Joubert syndrome, 612291 (3).
BioGrid reports that CG2219 interacts with CG2934 .
VDRC has 3 RNAi stocks for FBgn0039889 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain786 ± 54 of 4 2.20Up
Head429 ± 214 of 4 1.20None
Eye600 ± 194 of 4 1.65Up
Thoracicoabdominal ganglion817 ± 54 of 4 2.20Up
Salivary gland492 ± 74 of 4 1.35Up
Crop432 ± 104 of 4 1.20None
Midgut199 ± 74 of 4 0.50Down
Tubule366 ± 94 of 4 1.00None
Hindgut329 ± 34 of 4 0.90None
Heart366 ± 124 of 4 1.00None
Fat body248 ± 144 of 4 0.68Down
Ovary714 ± 244 of 4 2.00Up
Testis245 ± 34 of 4 0.70Down
Male accessory glands261 ± 64 of 4 0.70Down
Virgin spermatheca342 ± 124 of 4 0.94None
Mated spermatheca319 ± 74 of 4 0.88None
Adult carcass244 ± 14 of 4 0.70Down
Larval CNS580 ± 54 of 4 1.59Up
Larval Salivary gland444 ± 174 of 4 1.22None
Larval midgut162 ± 84 of 4 0.44Down
Larval tubule632 ± 154 of 4 1.70Up
Larval hindgut322 ± 94 of 4 0.88None
Larval fat body543 ± 194 of 4 1.50Up
Larval trachea604 ± 384 of 4 1.65Up
Larval carcass303 ± 84 of 4 0.83None
S2 cells (growing)284 ± 44 of 4 0.78None
Whole fly365 ± 274 of 4

Looking for FBgn0039889. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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