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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039896 through 18771 annotations produced 1 hits

yellow-h (yellow-h):

Annotation Number : CG1629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039896
Gbrowse : chr4:248549-251054 (+) // 99.73 //
Probeset : 1633329_at
Accessions : protein= NP_651912;, nucleotide= NM_143655;
FlyMine data for FBgn0039896.
VDRC has 3 RNAi stocks for FBgn0039896 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 1.20None
Head172 114 of 4 8.80Up
Eye133 94 of 4 6.80Up
Thoracicoabdominal ganglion21 24 of 4 1.10None
Salivary gland12 31 of 4 0.61None
Crop350 244 of 417.90Up
Midgut15 14 of 4 0.80None
Tubule17 14 of 4 0.90None
Hindgut22 14 of 4 1.10None
Heart13 14 of 4 0.70Down
Fat body7 13 of 4 0.39Down
Ovary2 00 of 4 0.10Down
Testis53 64 of 4 2.80Up
Male accessory glands4 21 of 4 0.20Down
Virgin spermatheca17 14 of 4 0.88None
Mated spermatheca19 24 of 4 1.01None
Adult carcass40 44 of 4 2.10Up
Larval CNS8 24 of 4 0.44Down
Larval Salivary gland15 34 of 4 0.80None
Larval midgut2 00 of 4 0.13Down
Larval tubule8 04 of 4 0.40Down
Larval hindgut28 24 of 4 1.45Up
Larval fat body7 11 of 4 0.40Down
Larval trachea66 74 of 4 3.42Up
Larval carcass39 34 of 4 1.99Up
S2 cells (growing)11 04 of 4 0.57Down
Whole fly19 14 of 4

Looking for FBgn0039896. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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