FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039897 through 18771 annotations produced 2 hits

(CG1674):

Annotation Number : CG1674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039897
Gbrowse : chr4:252108-265205 (+) // 100.0 //
Probeset : 1625476_a_at
Accessions : protein= NP_001162821; /// NP_001162822; /// NP_001162823; /// NP_651913; /// NP_726553; /// NP_726554; /// NP_995588;, nucleotide= NM_001169350; /// NM_001169351; /// NM_001169352; /// NM_143656; /// NM_166746; /// NM_166747; /// NM_205866;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039897.
BDGP gene expression has embryonic in situ data for CG1674: 18 pix of staining in 3 body parts.
BioGrid reports that CG1674 interacts with CG3157 CG18449 CG4303 CG5009 CG5327 CG7347 CG9520 .
VDRC has 3 RNAi stocks for FBgn0039897 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 0	3 of 4	0.10	Down
Head	121 ± 13	4 of 4	0.90	None
Eye	16 ± 2	4 of 4	0.12	Down
Thoracicoabdominal ganglion	22 ± 1	3 of 4	0.20	Down
Salivary gland	5 ± 2	0 of 4	0.04	Down
Crop	633 ± 15	4 of 4	4.60	Up
Midgut	32 ± 0	3 of 4	0.20	Down
Tubule	25 ± 5	2 of 4	0.20	Down
Hindgut	212 ± 12	4 of 4	1.50	Up
Heart	87 ± 12	4 of 4	0.64	Down
Fat body	10 ± 4	0 of 4	0.07	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	11 ± 1	2 of 4	0.10	Down
Male accessory glands	52 ± 5	4 of 4	0.40	Down
Virgin spermatheca	4 ± 1	0 of 4	0.03	Down
Mated spermatheca	14 ± 3	0 of 4	0.10	Down
Adult carcass	449 ± 18	4 of 4	3.30	Up
Larval CNS	6 ± 2	0 of 4	0.05	Down
Larval Salivary gland	3 ± 1	0 of 4	0.03	Down
Larval midgut	13 ± 4	0 of 4	0.10	Down
Larval tubule	35 ± 5	4 of 4	0.30	Down
Larval hindgut	184 ± 9	4 of 4	1.34	Up
Larval fat body	2 ± 1	0 of 4	0.00	Down
Larval trachea	30 ± 10	3 of 4	0.22	Down
Larval carcass	1248 ± 99	4 of 4	9.09	Up
S2 cells (growing)	19 ± 1	2 of 4	0.14	Down
Whole fly	137 ± 8	4 of 4

():

Annotation Number : CG1674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr4:252108-265205 (+) // 100.0 //
Probeset : 1626694_at
Accessions : protein= NP_001162821; /// NP_001162822; /// NP_001162823; /// NP_651913; /// NP_726553; /// NP_726554; /// NP_995588;, nucleotide= NM_001169350; /// NM_001169351; /// NM_001169352; /// NM_143656; /// NM_166746; /// NM_166747; /// NM_205866;
Interpro : 0005515 // protein binding // inferred from physical interaction
BioGrid reports that CG1674 interacts with CG3157 CG18449 CG4303 CG5009 CG5327 CG7347 CG9520 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.10	Down
Head	22 ± 3	4 of 4	0.60	None
Eye	3 ± 1	0 of 4	0.08	Down
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.10	Down
Salivary gland	1 ± 0	0 of 4	0.04	Down
Crop	123 ± 1	4 of 4	3.00	Up
Midgut	12 ± 1	3 of 4	0.30	Down
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	28 ± 3	4 of 4	0.70	None
Heart	47 ± 4	4 of 4	1.15	None
Fat body	3 ± 3	0 of 4	0.08	Down
Ovary	2 ± 0	0 of 4	0.00	Down
Testis	6 ± 1	2 of 4	0.10	Down
Male accessory glands	17 ± 1	3 of 4	0.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.04	Down
Mated spermatheca	2 ± 1	0 of 4	0.06	Down
Adult carcass	126 ± 14	4 of 4	3.00	Up
Larval CNS	2 ± 1	0 of 4	0.07	Down
Larval Salivary gland	1 ± 0	0 of 4	0.03	Down
Larval midgut	9 ± 1	3 of 4	0.22	Down
Larval tubule	4 ± 0	0 of 4	0.10	Down
Larval hindgut	14 ± 1	4 of 4	0.36	None
Larval fat body	2 ± 1	0 of 4	0.10	Down
Larval trachea	3 ± 2	0 of 4	0.09	Down
Larval carcass	14 ± 1	4 of 4	0.36	None
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	41 ± 8	4 of 4

Looking for FBgn0039897. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720