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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039900 through 18771 annotations produced 1 hits



Synaptotagmin VII (Syt7):

Annotation Number : CG2381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039900
Gbrowse : chr4:299302-327107 (-) // 100.0 //
Probeset : 1627821_s_at
Accessions : protein= NP_001014686; /// NP_651916; /// NP_726557; /// NP_726558; /// NP_726560; /// NP_995593;, nucleotide= NM_001014686; /// NM_143659; /// NM_166748; /// NM_166749; /// NM_166751; /// NM_205871;
Pathway : 0008021 // synaptic vesicle // inferred from electronic annotation /// 0008021 // synaptic vesicle // inferred from sequ
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005544 // calcium-dependent phospholipid bin
FlyMine data for FBgn0039900.
BioGrid reports that CG2381 interacts with CG31029 .
TRiP has 1 RNAi stocks for FBgn0039900 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1618 554 of 431.10Up
Head503 234 of 4 9.70Up
Eye275 224 of 4 5.29Up
Thoracicoabdominal ganglion993 414 of 419.10Up
Salivary gland13 30 of 4 0.27Down
Crop7 23 of 4 0.20Down
Midgut6 02 of 4 0.10Down
Tubule5 00 of 4 0.10Down
Hindgut8 13 of 4 0.20Down
Heart14 14 of 4 0.27Down
Fat body35 54 of 4 0.68Down
Ovary2 12 of 4 0.10Down
Testis2 10 of 4 0.00Down
Male accessory glands83 74 of 4 1.60Up
Virgin spermatheca17 14 of 4 0.33Down
Mated spermatheca19 14 of 4 0.37Down
Adult carcass22 44 of 4 0.40Down
Larval CNS590 924 of 411.33Up
Larval Salivary gland7 21 of 4 0.15Down
Larval midgut7 02 of 4 0.14Down
Larval tubule5 12 of 4 0.10Down
Larval hindgut5 14 of 4 0.11Down
Larval fat body11 12 of 4 0.20Down
Larval trachea10 63 of 4 0.20Down
Larval carcass8 23 of 4 0.16Down
S2 cells (growing)3 01 of 4 0.06Down
Whole fly52 14 of 4

Looking for FBgn0039900. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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