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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039904 through 18771 annotations produced 1 hits



Host cell factor (Hcf):

Annotation Number : CG1710
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039904
Gbrowse : chr4:380577-395605 (+) // 99.93 //
Probeset : 1636418_s_at
Accessions : protein= NP_524621; /// NP_726566; /// NP_726567; /// NP_995595;, nucleotide= NM_079882; /// NM_166756; /// NM_166757; /// NM_205873;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0039904.
TRiP has 2 RNAi stocks for FBgn0039904 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039904 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 34 of 411.40Up
Head15 ± 24 of 4 2.40Up
Eye11 ± 13 of 4 1.77None
Thoracicoabdominal ganglion35 ± 34 of 4 5.30Up
Salivary gland17 ± 13 of 4 2.59Up
Crop6 ± 02 of 4 1.00None
Midgut6 ± 10 of 4 1.00None
Tubule7 ± 02 of 4 1.10None
Hindgut6 ± 01 of 4 1.00None
Heart4 ± 00 of 4 0.67None
Fat body12 ± 34 of 4 1.81Up
Ovary2 ± 00 of 4 0.40Down
Testis2 ± 10 of 4 0.40Down
Male accessory glands9 ± 23 of 4 1.40None
Virgin spermatheca8 ± 13 of 4 1.20None
Mated spermatheca8 ± 01 of 4 1.24None
Adult carcass16 ± 21 of 4 2.50Up
Larval CNS53 ± 114 of 4 8.01Up
Larval Salivary gland5 ± 11 of 4 0.78None
Larval midgut4 ± 10 of 4 0.69None
Larval tubule6 ± 11 of 4 1.00None
Larval hindgut6 ± 11 of 4 0.94None
Larval fat body4 ± 10 of 4 0.70None
Larval trachea3 ± 30 of 4 0.58None
Larval carcass7 ± 02 of 4 1.09None
S2 cells (growing)5 ± 01 of 4 0.79None
Whole fly6 ± 02 of 4

Looking for FBgn0039904. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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