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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039908 through 18771 annotations produced 1 hits



Asator (Asator):

Annotation Number : CG11533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039908
Gbrowse : chr4:491910-509797 (-) // 100.0 //
Probeset : 1627955_a_at
Accessions : protein= NP_651924; /// NP_726576; /// NP_726577;, nucleotide= NM_143667; /// NM_166765; /// NM_166766;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005819 // spindle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0039908.
Homophila reports that CG11533 is a close match (6e-27) to human gene (NP_620693), a gene associated with .
BioGrid reports that CG11533 interacts with CG9170 .
TRiP has 2 RNAi stocks for FBgn0039908 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039908 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1035 ± 204 of 415.50Up
Head276 ± 194 of 4 4.10Up
Eye341 ± 304 of 4 5.09Up
Thoracicoabdominal ganglion852 ± 224 of 412.70Up
Salivary gland15 ± 42 of 4 0.23Down
Crop156 ± 34 of 4 2.30Up
Midgut25 ± 14 of 4 0.40Down
Tubule13 ± 04 of 4 0.20Down
Hindgut64 ± 14 of 4 1.00None
Heart53 ± 54 of 4 0.80None
Fat body23 ± 14 of 4 0.35Down
Ovary15 ± 14 of 4 0.20Down
Testis8 ± 04 of 4 0.10Down
Male accessory glands44 ± 14 of 4 0.70Down
Virgin spermatheca32 ± 24 of 4 0.48Down
Mated spermatheca36 ± 14 of 4 0.55Down
Adult carcass126 ± 44 of 4 1.90Up
Larval CNS428 ± 164 of 4 6.39Up
Larval Salivary gland17 ± 24 of 4 0.26Down
Larval midgut18 ± 24 of 4 0.28Down
Larval tubule22 ± 24 of 4 0.30Down
Larval hindgut57 ± 24 of 4 0.86None
Larval fat body24 ± 14 of 4 0.40Down
Larval trachea28 ± 104 of 4 0.42Down
Larval carcass147 ± 154 of 4 2.21Up
S2 cells (growing)282 ± 34 of 4 4.22Up
Whole fly67 ± 54 of 4

Looking for FBgn0039908. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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