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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039909 through 18771 annotations produced 1 hits

NADH ubiquinone oxidoreductase 49 kDa /// NADH:ubiquinone oxidoreductase 49 kDa subunit (CG1970 /// DpseGA25154):

Annotation Number : CG1970
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039909
Gbrowse : chr4:588913-591420 (-) // 100.0 //
Probeset : 1630695_at
Accessions : protein= NP_651926;, nucleotide= NM_143669;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0019684 // photosynthesis
Interpro : light reaction // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic an
FlyMine data for FBgn0039909.
BDGP gene expression has embryonic in situ data for CG1970: 15 pix of staining in 6 body parts.
Homophila reports that CG1970 is a close match (0) to human gene NDUFS2 (NP_004541), a gene associated with Mitochondrial complex I deficiency, 252010 (3).
BioGrid reports that CG1970 interacts with CG5373 CG2830 Dmel CG14425 .
TRiP has 1 RNAi stocks for FBgn0039909 available for purchase.
VDRC has 4 RNAi stocks for FBgn0039909 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1675 274 of 4 1.30Up
Head1725 284 of 4 1.30Up
Eye1163 314 of 4 0.89Down
Thoracicoabdominal ganglion2136 614 of 4 1.60Up
Salivary gland2014 814 of 4 1.55Up
Crop1309 344 of 4 1.00None
Midgut1204 374 of 4 0.90None
Tubule2579 454 of 4 2.00Up
Hindgut1796 224 of 4 1.40Up
Heart1966 234 of 4 1.51Up
Fat body1676 1714 of 4 1.29Up
Ovary579 54 of 4 0.40Down
Testis147 14 of 4 0.10Down
Male accessory glands867 104 of 4 0.70Down
Virgin spermatheca1541 494 of 4 1.19Up
Mated spermatheca1424 584 of 4 1.10None
Adult carcass3121 1424 of 4 2.40Up
Larval CNS821 204 of 4 0.63Down
Larval Salivary gland1201 344 of 4 0.92None
Larval midgut901 404 of 4 0.69Down
Larval tubule888 394 of 4 0.70Down
Larval hindgut1404 634 of 4 1.08None
Larval fat body511 524 of 4 0.40Down
Larval trachea797 374 of 4 0.61Down
Larval carcass1502 1334 of 4 1.15None
S2 cells (growing)581 74 of 4 0.45Down
Whole fly1300 374 of 4

Looking for FBgn0039909. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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