FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039915 through 18771 annotations produced 2 hits

/// (CG1732 /// CG6218):

Annotation Number : CG6218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038321
Gbrowse : chr3R:11163629-11168978 (-) // 100.0 //
Probeset : 1629973_at
Accessions : protein= NP_650448;, nucleotide= NM_142191;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0038321.
BDGP gene expression has embryonic in situ data for CG6218: 35 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0038321 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038321 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	582 ± 5	4 of 4	5.50	Up
Head	267 ± 13	4 of 4	2.50	Up
Eye	148 ± 4	4 of 4	1.41	Up
Thoracicoabdominal ganglion	690 ± 26	4 of 4	6.60	Up
Salivary gland	187 ± 12	4 of 4	1.79	Up
Crop	33 ± 2	4 of 4	0.30	Down
Midgut	208 ± 1	4 of 4	2.00	Up
Tubule	246 ± 26	4 of 4	2.40	Up
Hindgut	27 ± 1	4 of 4	0.30	Down
Heart	38 ± 1	4 of 4	0.37	Down
Fat body	79 ± 17	4 of 4	0.76	None
Ovary	124 ± 4	4 of 4	1.20	None
Testis	36 ± 4	4 of 4	0.30	Down
Male accessory glands	113 ± 6	4 of 4	1.10	None
Virgin spermatheca	75 ± 5	4 of 4	0.72	Down
Mated spermatheca	81 ± 3	4 of 4	0.78	None
Adult carcass	42 ± 4	4 of 4	0.40	Down
Larval CNS	511 ± 31	4 of 4	4.88	Up
Larval Salivary gland	56 ± 4	4 of 4	0.53	Down
Larval midgut	545 ± 18	4 of 4	5.19	Up
Larval tubule	877 ± 34	4 of 4	8.40	Up
Larval hindgut	70 ± 3	4 of 4	0.67	Down
Larval fat body	24 ± 2	4 of 4	0.20	Down
Larval trachea	38 ± 4	4 of 4	0.36	Down
Larval carcass	76 ± 8	4 of 4	0.73	None
S2 cells (growing)	60 ± 5	4 of 4	0.58	Down
Whole fly	105 ± 8	4 of 4

(CG1732):

Annotation Number : CG1732
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039915
Gbrowse : chr4:650318-655263 (+) // 100.0 //
Probeset : 1633033_s_at
Accessions : protein= NP_651930; /// NP_726594;, nucleotide= NM_143673; /// NM_166779;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // inferred from ele
Interpro : 0005328 // neurotransmitter:sodium symporter activity // inferred from electronic annotation /// 0005332 // gamma-aminob
FlyMine data for FBgn0039915.
BDGP gene expression has embryonic in situ data for CG1732: 32 pix of staining in 4 body parts.
Homophila reports that CG1732 is a close match (1e-67) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
TRiP has 1 RNAi stocks for FBgn0039915 available for purchase.
VDRC has 4 RNAi stocks for FBgn0039915 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	780 ± 43	4 of 4	32.50	Up
Head	331 ± 46	4 of 4	13.80	Up
Eye	29 ± 3	4 of 4	1.24	None
Thoracicoabdominal ganglion	1426 ± 72	4 of 4	59.40	Up
Salivary gland	15 ± 1	2 of 4	0.62	Down
Crop	6 ± 1	3 of 4	0.30	Down
Midgut	3 ± 1	0 of 4	0.10	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	7 ± 1	1 of 4	0.30	Down
Heart	8 ± 0	4 of 4	0.35	Down
Fat body	14 ± 7	3 of 4	0.61	None
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	5 ± 0	1 of 4	0.20	Down
Male accessory glands	82 ± 5	4 of 4	3.40	Up
Virgin spermatheca	4 ± 2	0 of 4	0.20	Down
Mated spermatheca	5 ± 1	1 of 4	0.23	Down
Adult carcass	18 ± 2	4 of 4	0.80	None
Larval CNS	408 ± 85	4 of 4	17.01	Up
Larval Salivary gland	6 ± 2	1 of 4	0.26	Down
Larval midgut	1 ± 0	0 of 4	0.05	Down
Larval tubule	4 ± 1	1 of 4	0.20	Down
Larval hindgut	4 ± 0	3 of 4	0.19	Down
Larval fat body	413 ± 77	4 of 4	17.20	Up
Larval trachea	3 ± 2	0 of 4	0.14	Down
Larval carcass	5 ± 0	2 of 4	0.21	Down
S2 cells (growing)	4 ± 1	2 of 4	0.18	Down
Whole fly	24 ± 1	4 of 4

Looking for FBgn0039915. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720