FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039916 through 18771 annotations produced 1 hits

(CG9935):

Annotation Number : CG9935
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039916
Gbrowse : chr4:656750-667182 (-) // 100.0 //
Probeset : 1626574_at
Accessions : protein= NP_001036250; /// NP_001036251; /// NP_651931;, nucleotide= NM_001042785; /// NM_001042786; /// NM_143674;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0039916.
BDGP gene expression has embryonic in situ data for CG9935: 4 pix of staining in 1 body parts.
Homophila reports that CG9935 is a close match (5e-97) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 2 RNAi stocks for FBgn0039916 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039916 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	44 ± 2	4 of 4	2.50	Up
Head	218 ± 9	4 of 4	12.20	Up
Eye	825 ± 59	4 of 4	45.98	Up
Thoracicoabdominal ganglion	10 ± 2	3 of 4	0.60	None
Salivary gland	14 ± 3	1 of 4	0.79	None
Crop	6 ± 2	0 of 4	0.30	Down
Midgut	6 ± 0	0 of 4	0.40	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	15 ± 2	4 of 4	0.90	None
Heart	3 ± 1	0 of 4	0.18	Down
Fat body	8 ± 3	2 of 4	0.46	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	5 ± 1	2 of 4	0.30	Down
Male accessory glands	39 ± 6	4 of 4	2.20	Up
Virgin spermatheca	8 ± 1	3 of 4	0.49	Down
Mated spermatheca	11 ± 3	2 of 4	0.66	None
Adult carcass	5 ± 1	0 of 4	0.30	Down
Larval CNS	8 ± 1	4 of 4	0.50	Down
Larval Salivary gland	8 ± 1	0 of 4	0.49	Down
Larval midgut	2 ± 1	0 of 4	0.12	Down
Larval tubule	6 ± 2	2 of 4	0.40	Down
Larval hindgut	6 ± 0	2 of 4	0.37	Down
Larval fat body	14 ± 0	3 of 4	0.80	None
Larval trachea	15 ± 23	1 of 4	0.85	None
Larval carcass	5 ± 0	1 of 4	0.32	Down
S2 cells (growing)	6 ± 0	1 of 4	0.37	Down
Whole fly	18 ± 2	4 of 4

Looking for FBgn0039916. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720