Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039929 through 18771 annotations produced 1 hits



(CG11076):

Annotation Number : CG11076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039929
Gbrowse : chr4:1050334-1052286 (-) // 100.0 //
Probeset : 1628279_s_at
Accessions : protein= NP_651943; /// NP_726630;, nucleotide= NM_143686; /// NM_166807;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039929.
BDGP gene expression has embryonic in situ data for CG11076: 10 pix of staining in 20 body parts.
BioGrid reports that CG11076 interacts with CG9890 CG11194 CG11213 CG13022 CG14549 CG15308 CG2116 CG2849 CG33129 CG33193 CG3769 CG5017 CG5771 CG8173 CG8292 CG33275 .
VDRC has 3 RNAi stocks for FBgn0039929 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain657 ± 244 of 4 1.20Up
Head354 ± 134 of 4 0.70Down
Eye268 ± 14 of 4 0.50Down
Thoracicoabdominal ganglion714 ± 164 of 4 1.30Up
Salivary gland484 ± 264 of 4 0.90None
Crop272 ± 84 of 4 0.50Down
Midgut239 ± 144 of 4 0.40Down
Tubule319 ± 144 of 4 0.60Down
Hindgut207 ± 74 of 4 0.40Down
Heart284 ± 104 of 4 0.53Down
Fat body319 ± 314 of 4 0.59Down
Ovary846 ± 114 of 4 1.60Up
Testis229 ± 124 of 4 0.40Down
Male accessory glands554 ± 74 of 4 1.00None
Virgin spermatheca246 ± 144 of 4 0.46Down
Mated spermatheca316 ± 144 of 4 0.59Down
Adult carcass236 ± 24 of 4 0.40Down
Larval CNS520 ± 234 of 4 0.97None
Larval Salivary gland405 ± 204 of 4 0.75Down
Larval midgut149 ± 134 of 4 0.28Down
Larval tubule170 ± 164 of 4 0.30Down
Larval hindgut250 ± 304 of 4 0.46Down
Larval fat body115 ± 94 of 4 0.20Down
Larval trachea440 ± 474 of 4 0.82Down
Larval carcass224 ± 564 of 4 0.42Down
S2 cells (growing)260 ± 24 of 4 0.48Down
Whole fly539 ± 84 of 4

Looking for FBgn0039929. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime