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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039930 through 18771 annotations produced 1 hits


Annotation Number : CG11077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039930
Gbrowse : chr4:1049300-1049985 (-) // 100.0 //
Probeset : 1636950_at
Accessions : protein= NP_651944;, nucleotide= NM_143687;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred
FlyMine data for FBgn0039930.
BDGP gene expression has embryonic in situ data for CG11077: 14 pix of staining in 3 body parts.
Homophila reports that CG11077 is a close match (2e-21) to human gene MPV17 (NP_002428), a gene associated with Mitochondrial DNA depletion syndrome, hepatocerebral form, 251880 (3).
BioGrid reports that CG11077 interacts with CG11581 .
TRiP has 1 RNAi stocks for FBgn0039930 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039930 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 104 of 4 1.30Up
Head445 114 of 4 2.20Up
Eye842 214 of 4 4.19Up
Thoracicoabdominal ganglion300 64 of 4 1.50Up
Salivary gland57 60 of 4 0.29Down
Crop136 54 of 4 0.70Down
Midgut252 64 of 4 1.30Up
Tubule244 284 of 4 1.20None
Hindgut365 164 of 4 1.80Up
Heart604 424 of 4 3.01Up
Fat body391 334 of 4 1.95Up
Ovary231 24 of 4 1.20None
Testis64 34 of 4 0.30Down
Male accessory glands323 224 of 4 1.60Up
Virgin spermatheca401 114 of 4 2.00Up
Mated spermatheca399 144 of 4 1.99Up
Adult carcass268 114 of 4 1.30Up
Larval CNS199 104 of 4 0.99None
Larval Salivary gland53 73 of 4 0.27Down
Larval midgut364 244 of 4 1.81Up
Larval tubule110 84 of 4 0.60Down
Larval hindgut217 64 of 4 1.08None
Larval fat body168 294 of 4 0.80None
Larval trachea121 284 of 4 0.61Down
Larval carcass197 64 of 4 0.98None
S2 cells (growing)425 84 of 4 2.12Up
Whole fly200 114 of 4

Looking for FBgn0039930. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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