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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039938 through 18771 annotations produced 1 hits



Sox102F (Sox102F):

Annotation Number : CG11153
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039938
Gbrowse : chr4:821908-827971 (-) // 100.0 //
Probeset : 1636331_at
Accessions : protein= NP_001014695; /// NP_726612;, nucleotide= NM_001014695; /// NM_166792;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0039938.
BDGP gene expression has embryonic in situ data for Sox102F: 26 pix of staining in 4 body parts.
Homophila reports that CG11153 is a close match (9e-14) to human gene MRGH;SOX3 (NP_005625), a gene associated with Mental retardation, X-linked, with isolated growth hormone deficiency, 300123 (3);Panhypopituitarism, X-linked, 312000 (3).
TRiP has 1 RNAi stocks for FBgn0039938 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 34 of 4 4.20Up
Head94 134 of 4 2.70Up
Eye25 44 of 4 0.73None
Thoracicoabdominal ganglion9 12 of 4 0.30Down
Salivary gland14 20 of 4 0.41Down
Crop179 74 of 4 5.10Up
Midgut2 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut25 04 of 4 0.70Down
Heart86 84 of 4 2.48Up
Fat body225 294 of 4 6.41Up
Ovary7 03 of 4 0.20Down
Testis6 12 of 4 0.20Down
Male accessory glands6 20 of 4 0.20Down
Virgin spermatheca79 54 of 4 2.26Up
Mated spermatheca77 44 of 4 2.20Up
Adult carcass153 144 of 4 4.40Up
Larval CNS60 54 of 4 1.71Up
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut3 10 of 4 0.10Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 00 of 4 0.10Down
Larval fat body7 01 of 4 0.20Down
Larval trachea4 20 of 4 0.13Down
Larval carcass19 24 of 4 0.54Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly35 14 of 4

Looking for FBgn0039938. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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