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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039941 through 18771 annotations produced 1 hits



(CG17167):

Annotation Number : CG40146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039941
Gbrowse : chrXHet:47120-58943 (+) // 100.0 //
Probeset : 1628847_a_at
Accessions : protein= NP_001015256; /// NP_001015257;, nucleotide= NM_001015256; /// NM_001015257;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0008273 // calcium
FlyMine data for FBgn0039941.
TRiP has 1 RNAi stocks for FBgn0039941 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039941 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 03 of 4 0.40Down
Head17 24 of 4 0.70None
Eye12 22 of 4 0.47Down
Thoracicoabdominal ganglion11 10 of 4 0.40Down
Salivary gland27 40 of 4 0.99None
Crop31 04 of 4 1.20None
Midgut330 124 of 412.10Up
Tubule20 22 of 4 0.70Down
Hindgut37 24 of 4 1.40None
Heart7 04 of 4 0.29Down
Fat body8 31 of 4 0.32Down
Ovary9 11 of 4 0.40Down
Testis36 04 of 4 1.30None
Male accessory glands15 52 of 4 0.60None
Virgin spermatheca9 30 of 4 0.33Down
Mated spermatheca10 20 of 4 0.39Down
Adult carcass12 60 of 4 0.50None
Larval CNS8 12 of 4 0.30Down
Larval Salivary gland9 20 of 4 0.34Down
Larval midgut239 264 of 4 8.73Up
Larval tubule14 20 of 4 0.50Down
Larval hindgut14 13 of 4 0.51Down
Larval fat body12 41 of 4 0.40Down
Larval trachea4 10 of 4 0.17Down
Larval carcass13 10 of 4 0.50Down
S2 cells (growing)29 14 of 4 1.06None
Whole fly27 33 of 4

Looking for FBgn0039941. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime