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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039946 through 18771 annotations produced 1 hits



(A+T)-stretch binding protein (ATbp):

Annotation Number : CG40145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039946
Gbrowse : chrXHet:84921-87149 (+) // 100.0 //
Probeset : 1637859_at
Accessions : protein= NP_001104481;, nucleotide= NM_001111011;
Pathway : DNA-dependent // inferred from direct assay /// 0006357 // regulation of transcription from RNA polymerase II promoter
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred by curator /// 000563
FlyMine data for FBgn0039946.
TRiP has 1 RNAi stocks for FBgn0039946 available for purchase.
VDRC has 1 RNAi stocks for FBgn0039946 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 14 of 4 4.60Up
Head24 04 of 4 1.70Up
Eye24 24 of 4 1.69Up
Thoracicoabdominal ganglion57 64 of 4 3.90Up
Salivary gland32 63 of 4 2.19None
Crop15 24 of 4 1.10None
Midgut9 11 of 4 0.70None
Tubule10 01 of 4 0.70Down
Hindgut12 14 of 4 0.80None
Heart8 12 of 4 0.55None
Fat body19 34 of 4 1.35None
Ovary40 14 of 4 2.80Up
Testis5 01 of 4 0.40Down
Male accessory glands13 12 of 4 0.90None
Virgin spermatheca15 14 of 4 1.03None
Mated spermatheca18 04 of 4 1.25None
Adult carcass14 51 of 4 1.00None
Larval CNS73 64 of 4 5.03Up
Larval Salivary gland26 14 of 4 1.79Up
Larval midgut9 12 of 4 0.68None
Larval tubule18 04 of 4 1.30None
Larval hindgut15 14 of 4 1.08None
Larval fat body13 12 of 4 0.90None
Larval trachea26 44 of 4 1.81Up
Larval carcass12 14 of 4 0.86None
S2 cells (growing)18 04 of 4 1.26None
Whole fly14 24 of 4

Looking for FBgn0039946. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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