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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039958 through 18771 annotations produced 1 hits



(CG12567):

Annotation Number : CG12567
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039958
Gbrowse : chr2LHet:19936-32995 (-) // 100.0 //
Probeset : 1639388_a_at
Accessions : protein= NP_001015383; /// NP_001015384; /// NP_001104331; /// NP_001163833; /// NP_001163834;, nucleotide= NM_001015383; /// NM_001015384; /// NM_001110861; /// NM_001170362; /// NM_001170363;
Interpro : 0004788 // thiamin diphosphokinase activity // inferred from sequence or structural similarity /// 0004788 // thiamin di
FlyMine data for FBgn0039958.
BioGrid reports that CG12567 interacts with CG32029 .
VDRC has 5 RNAi stocks for FBgn0039958 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain350 ± 74 of 4 0.90None
Head191 ± 104 of 4 0.50Down
Eye105 ± 84 of 4 0.28Down
Thoracicoabdominal ganglion338 ± 144 of 4 0.90None
Salivary gland220 ± 124 of 4 0.59Down
Crop196 ± 154 of 4 0.50Down
Midgut201 ± 114 of 4 0.50Down
Tubule154 ± 74 of 4 0.40Down
Hindgut184 ± 64 of 4 0.50Down
Heart118 ± 84 of 4 0.32Down
Fat body145 ± 134 of 4 0.39Down
Ovary898 ± 224 of 4 2.40Up
Testis44 ± 34 of 4 0.10Down
Male accessory glands129 ± 84 of 4 0.30Down
Virgin spermatheca100 ± 114 of 4 0.27Down
Mated spermatheca115 ± 94 of 4 0.31Down
Adult carcass135 ± 154 of 4 0.40Down
Larval CNS292 ± 114 of 4 0.79Down
Larval Salivary gland173 ± 94 of 4 0.47Down
Larval midgut225 ± 94 of 4 0.61Down
Larval tubule265 ± 104 of 4 0.70Down
Larval hindgut237 ± 94 of 4 0.64Down
Larval fat body146 ± 84 of 4 0.40Down
Larval trachea237 ± 234 of 4 0.64Down
Larval carcass171 ± 94 of 4 0.46Down
S2 cells (growing)333 ± 94 of 4 0.90Down
Whole fly370 ± 74 of 4

Looking for FBgn0039958. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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