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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039965 through 18771 annotations produced 1 hits



(CG13865):

Annotation Number : CG13865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039965
Gbrowse : chrX:22415346-22417017 (+) // 99.58 //
Probeset : 1634100_at
Accessions : protein= NP_001036323; /// NP_001036324;, nucleotide= NM_001042858; /// NM_001042859;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0039965.
BioGrid reports that CG13865 interacts with CG9319 .
VDRC has 1 RNAi stocks for FBgn0039965 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain116 ± 94 of 4 0.80None
Head91 ± 24 of 4 0.70Down
Eye117 ± 34 of 4 0.86None
Thoracicoabdominal ganglion116 ± 24 of 4 0.80None
Salivary gland104 ± 114 of 4 0.76None
Crop217 ± 94 of 4 1.60Up
Midgut127 ± 94 of 4 0.90None
Tubule197 ± 74 of 4 1.40Up
Hindgut150 ± 84 of 4 1.10None
Heart122 ± 54 of 4 0.89None
Fat body180 ± 154 of 4 1.32Up
Ovary360 ± 154 of 4 2.60Up
Testis48 ± 14 of 4 0.40Down
Male accessory glands47 ± 54 of 4 0.30Down
Virgin spermatheca124 ± 54 of 4 0.91None
Mated spermatheca142 ± 74 of 4 1.04None
Adult carcass151 ± 44 of 4 1.10None
Larval CNS141 ± 54 of 4 1.03None
Larval Salivary gland122 ± 34 of 4 0.89None
Larval midgut103 ± 24 of 4 0.76None
Larval tubule143 ± 44 of 4 1.00None
Larval hindgut136 ± 24 of 4 1.00None
Larval fat body280 ± 304 of 4 2.00Up
Larval trachea152 ± 164 of 4 1.11None
Larval carcass132 ± 34 of 4 0.96None
S2 cells (growing)141 ± 34 of 4 1.03None
Whole fly137 ± 134 of 4

Looking for FBgn0039965. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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