Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039972 through 18771 annotations produced 1 hits



(CG17018):

Annotation Number : CG17018
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039972
Gbrowse : chr2L:22311930-22368776 (+) // 100.0 //
Probeset : 1623825_s_at
Accessions : protein= NP_724392; /// NP_724393; /// NP_724394;, nucleotide= NM_165413; /// NM_165414; /// NM_165415;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0039972.
BDGP gene expression has embryonic in situ data for CG17018: 4 pix of staining in 1 body parts.
BioGrid reports that CG17018 interacts with CG1919 Dmel CG2987 CG3075 CG5501 CG33141 CG3726 CG3780 CG3998 CG4216 CG5099 CG6945 CG7156 CG8590 .
VDRC has 2 RNAi stocks for FBgn0039972 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 04 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye10 ± 13 of 4 0.01Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.00Down
Salivary gland16 ± 51 of 4 0.02Down
Crop7 ± 10 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule19 ± 130 of 4 0.00Down
Hindgut8 ± 12 of 4 0.00Down
Heart7 ± 12 of 4 0.01Down
Fat body17 ± 34 of 4 0.02Down
Ovary2294 ± 244 of 4 2.60Up
Testis70 ± 54 of 4 0.10Down
Male accessory glands747 ± 384 of 4 0.90None
Virgin spermatheca15 ± 14 of 4 0.02Down
Mated spermatheca11 ± 23 of 4 0.01Down
Adult carcass30 ± 112 of 4 0.00Down
Larval CNS11 ± 14 of 4 0.01Down
Larval Salivary gland3 ± 00 of 4 0.00Down
Larval midgut15 ± 31 of 4 0.02Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut9 ± 04 of 4 0.01Down
Larval fat body17 ± 43 of 4 0.00Down
Larval trachea18 ± 34 of 4 0.02Down
Larval carcass9 ± 13 of 4 0.01Down
S2 cells (growing)1296 ± 194 of 4 1.50Up
Whole fly866 ± 544 of 4

Looking for FBgn0039972. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime