Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039977 through 18771 annotations produced 1 hits



(CG17454):

Annotation Number : LD28068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039977
Gbrowse : chr3L:23708197-23709791 (+) // 100.0 //
Probeset : 1630820_at
Accessions : protein= NP_001138001;, nucleotide= NM_001144529;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
FlyMine data for FBgn0039977.
VDRC has 1 RNAi stocks for FBgn0039977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain461 ± 84 of 4 1.30Up
Head277 ± 104 of 4 0.80Down
Eye569 ± 204 of 4 1.63Up
Thoracicoabdominal ganglion320 ± 94 of 4 0.90None
Salivary gland367 ± 64 of 4 1.05None
Crop308 ± 14 of 4 0.90Down
Midgut236 ± 44 of 4 0.70Down
Tubule220 ± 84 of 4 0.60Down
Hindgut252 ± 74 of 4 0.70Down
Heart465 ± 314 of 4 1.33Up
Fat body292 ± 164 of 4 0.83Down
Ovary697 ± 84 of 4 2.00Up
Testis230 ± 124 of 4 0.70Down
Male accessory glands327 ± 64 of 4 0.90None
Virgin spermatheca160 ± 64 of 4 0.46Down
Mated spermatheca167 ± 154 of 4 0.48Down
Adult carcass244 ± 114 of 4 0.70Down
Larval CNS337 ± 254 of 4 0.97None
Larval Salivary gland463 ± 134 of 4 1.33Up
Larval midgut224 ± 34 of 4 0.64Down
Larval tubule391 ± 114 of 4 1.10Up
Larval hindgut273 ± 54 of 4 0.78Down
Larval fat body434 ± 144 of 4 1.20Up
Larval trachea358 ± 384 of 4 1.02None
Larval carcass222 ± 74 of 4 0.64Down
S2 cells (growing)270 ± 24 of 4 0.77Down
Whole fly350 ± 124 of 4

Looking for FBgn0039977. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime