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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039979 through 18771 annotations produced 1 hits



(CG40282):

Annotation Number : CG40282
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039979
Gbrowse : chr2R:618350-619068 (-) // 100.0 //
Probeset : 1627450_at
Accessions : protein= NP_001036453;, nucleotide= NM_001042988;
FlyMine data for FBgn0039979.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.10None
Head2 ± 00 of 4 2.00Up
Eye1 ± 10 of 4 1.65None
Thoracicoabdominal ganglion5 ± 10 of 4 5.30Up
Salivary gland5 ± 40 of 4 5.35None
Crop1 ± 00 of 4 1.50None
Midgut2 ± 00 of 4 1.80None
Tubule2 ± 00 of 4 2.30Up
Hindgut1 ± 00 of 4 1.70None
Heart0 ± 00 of 4 0.81None
Fat body3 ± 20 of 4 2.95None
Ovary2 ± 00 of 4 2.00None
Testis6 ± 10 of 4 6.30Up
Male accessory glands2 ± 00 of 4 2.10None
Virgin spermatheca1 ± 00 of 4 1.53None
Mated spermatheca3 ± 00 of 4 2.91Up
Adult carcass3 ± 00 of 4 3.00None
Larval CNS4 ± 00 of 4 3.72Up
Larval Salivary gland5 ± 20 of 4 4.63None
Larval midgut3 ± 00 of 4 2.79Up
Larval tubule7 ± 10 of 4 6.90Up
Larval hindgut1 ± 00 of 4 1.30None
Larval fat body16 ± 10 of 414.90Up
Larval trachea2 ± 10 of 4 2.60None
Larval carcass2 ± 00 of 4 1.93None
S2 cells (growing)1 ± 00 of 4 1.16None
Whole fly1 ± 00 of 4

Looking for FBgn0039979. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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