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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039987 through 18771 annotations produced 2 hits



(CR12798):

Annotation Number : CG12798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039987
Gbrowse : chr3RHet:412737-412947 (-) // 100.0 //
Probeset : 1639463_x_at
Accessions : protein= NP_001015275;, nucleotide= NM_001015275;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0039987.
BioGrid reports that CG12798 interacts with CG6981 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 2.50None
Head2 ± 00 of 4 2.20None
Eye0 ± 00 of 4 0.95None
Thoracicoabdominal ganglion4 ± 12 of 4 4.40None
Salivary gland2 ± 00 of 4 2.88None
Crop4 ± 11 of 4 4.90None
Midgut2 ± 10 of 4 2.00None
Tubule4 ± 00 of 4 4.30Up
Hindgut5 ± 22 of 4 5.40None
Heart3 ± 00 of 4 3.27Up
Fat body3 ± 21 of 4 3.08None
Ovary1 ± 00 of 4 1.60None
Testis3 ± 00 of 4 3.00Up
Male accessory glands5 ± 10 of 4 5.30None
Virgin spermatheca1 ± 00 of 4 1.03None
Mated spermatheca2 ± 10 of 4 2.73None
Adult carcass1 ± 00 of 4 1.40None
Larval CNS1 ± 00 of 4 1.83Up
Larval Salivary gland3 ± 12 of 4 3.90None
Larval midgut3 ± 10 of 4 3.50None
Larval tubule2 ± 00 of 4 2.90None
Larval hindgut1 ± 00 of 4 1.75None
Larval fat body5 ± 10 of 4 5.90Up
Larval trachea3 ± 20 of 4 3.12None
Larval carcass4 ± 01 of 4 4.22Up
S2 cells (growing)2 ± 01 of 4 2.25None
Whole fly1 ± 00 of 4



(CR12798):

Annotation Number : CG12798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039987
Gbrowse : chr3RHet:412737-412947 (-) // 100.0 //
Probeset : 1634896_at
Accessions : protein= NP_001015275;, nucleotide= NM_001015275;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0039987.
BioGrid reports that CG12798 interacts with CG6981 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head1 ± 00 of 4 1.00None
Eye1 ± 00 of 4 0.64None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland3 ± 20 of 4 2.31None
Crop2 ± 00 of 4 1.60None
Midgut1 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 0.70None
Hindgut0 ± 00 of 4 0.30None
Heart1 ± 00 of 4 0.91None
Fat body0 ± 00 of 4 0.21None
Ovary0 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.30None
Male accessory glands4 ± 20 of 4 2.60None
Virgin spermatheca0 ± 00 of 4 0.16None
Mated spermatheca0 ± 00 of 4 0.36None
Adult carcass4 ± 20 of 4 2.60None
Larval CNS0 ± 00 of 4 0.43None
Larval Salivary gland1 ± 00 of 4 1.07None
Larval midgut0 ± 00 of 4 0.31None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.76None
Larval fat body3 ± 20 of 4 1.90None
Larval trachea2 ± 10 of 4 1.64None
Larval carcass1 ± 00 of 4 0.87None
S2 cells (growing)1 ± 00 of 4 0.99None
Whole fly1 ± 00 of 4

Looking for FBgn0039987. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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