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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039993 through 18771 annotations produced 1 hits



(CG17691):

Annotation Number : CG17691
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039993
Gbrowse : chrU:1178889-1184794 (+) // 100.0 //
Probeset : 1629813_at
Accessions : protein= NP_001015354; /// NP_001104016; /// NP_001104017; /// NP_001104018;, nucleotide= NM_001015354; /// NM_001110546; /// NM_001110547; /// NM_001110548;
Pathway : 0017086 // 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) complex // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003863 // 3-methyl-2-oxobutanoate dehydrogenas
FlyMine data for FBgn0039993.
VDRC has 1 RNAi stocks for FBgn0039993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain517 ± 174 of 4 0.80Down
Head682 ± 194 of 4 1.00None
Eye636 ± 324 of 4 0.95None
Thoracicoabdominal ganglion816 ± 334 of 4 1.20Up
Salivary gland2220 ± 184 of 4 3.30Up
Crop1047 ± 254 of 4 1.60Up
Midgut1199 ± 134 of 4 1.80Up
Tubule1593 ± 574 of 4 2.40Up
Hindgut1455 ± 394 of 4 2.20Up
Heart1306 ± 314 of 4 1.94Up
Fat body1217 ± 1894 of 4 1.81Up
Ovary741 ± 164 of 4 1.10None
Testis125 ± 24 of 4 0.20Down
Male accessory glands999 ± 104 of 4 1.50Up
Virgin spermatheca815 ± 264 of 4 1.21Up
Mated spermatheca809 ± 244 of 4 1.20Up
Adult carcass999 ± 504 of 4 1.50Up
Larval CNS655 ± 494 of 4 0.97None
Larval Salivary gland846 ± 274 of 4 1.26Up
Larval midgut1100 ± 584 of 4 1.64Up
Larval tubule642 ± 634 of 4 1.00None
Larval hindgut1434 ± 814 of 4 2.13Up
Larval fat body403 ± 114 of 4 0.60Down
Larval trachea1075 ± 454 of 4 1.60Up
Larval carcass1340 ± 1024 of 4 1.99Up
S2 cells (growing)671 ± 24 of 4 1.00None
Whole fly672 ± 294 of 4

Looking for FBgn0039993. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime