FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0040009 through 18771 annotations produced 2 hits

(CG17490):

Annotation Number : CG17490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040009
Gbrowse : chr2L:22430963-22440367 (+) // 100.0 //
Probeset : 1626379_a_at
Accessions : protein= NP_001036392; /// NP_001036393; /// NP_001036394; /// NP_001036395;, nucleotide= NM_001042927; /// NM_001042928; /// NM_001042929; /// NM_001042930;
FlyMine data for FBgn0040009.
BDGP gene expression has embryonic in situ data for CG17490: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0040009 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	65 ± 4	4 of 4	0.70	Down
Head	32 ± 4	4 of 4	0.30	Down
Eye	13 ± 2	4 of 4	0.15	Down
Thoracicoabdominal ganglion	44 ± 5	4 of 4	0.50	Down
Salivary gland	38 ± 4	4 of 4	0.41	Down
Crop	32 ± 2	4 of 4	0.40	Down
Midgut	38 ± 3	4 of 4	0.40	Down
Tubule	42 ± 2	4 of 4	0.50	Down
Hindgut	22 ± 2	4 of 4	0.20	Down
Heart	21 ± 3	4 of 4	0.24	Down
Fat body	43 ± 8	4 of 4	0.46	Down
Ovary	267 ± 7	4 of 4	2.90	Up
Testis	13 ± 1	4 of 4	0.10	Down
Male accessory glands	89 ± 1	4 of 4	1.00	None
Virgin spermatheca	26 ± 2	4 of 4	0.28	Down
Mated spermatheca	29 ± 1	4 of 4	0.32	Down
Adult carcass	23 ± 3	2 of 4	0.30	Down
Larval CNS	118 ± 12	4 of 4	1.27	Up
Larval Salivary gland	58 ± 7	4 of 4	0.63	Down
Larval midgut	38 ± 2	4 of 4	0.41	Down
Larval tubule	49 ± 4	4 of 4	0.50	Down
Larval hindgut	47 ± 1	4 of 4	0.51	Down
Larval fat body	56 ± 3	4 of 4	0.60	Down
Larval trachea	48 ± 10	4 of 4	0.52	Down
Larval carcass	34 ± 3	4 of 4	0.37	Down
S2 cells (growing)	159 ± 6	4 of 4	1.72	Up
Whole fly	92 ± 6	4 of 4

(CG17490):

Annotation Number : CG17490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040009
Gbrowse : chr2L:22431021-22433333 (+) // 100.0 //
Probeset : 1631612_at
Accessions : protein= NP_001036392; /// NP_001036393; /// NP_001036394; /// NP_001036395;, nucleotide= NM_001042927; /// NM_001042928; /// NM_001042929; /// NM_001042930;
FlyMine data for FBgn0040009.
BDGP gene expression has embryonic in situ data for CG17490: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0040009 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	68 ± 6	4 of 4	0.90	None
Head	26 ± 1	4 of 4	0.30	Down
Eye	22 ± 0	4 of 4	0.29	Down
Thoracicoabdominal ganglion	62 ± 3	4 of 4	0.80	None
Salivary gland	47 ± 5	4 of 4	0.61	Down
Crop	28 ± 3	4 of 4	0.40	Down
Midgut	33 ± 3	4 of 4	0.40	Down
Tubule	69 ± 6	4 of 4	0.90	None
Hindgut	27 ± 2	4 of 4	0.40	Down
Heart	29 ± 7	4 of 4	0.38	Down
Fat body	44 ± 7	4 of 4	0.58	Down
Ovary	233 ± 5	4 of 4	3.00	Up
Testis	16 ± 1	4 of 4	0.20	Down
Male accessory glands	73 ± 4	4 of 4	1.00	None
Virgin spermatheca	55 ± 3	4 of 4	0.72	None
Mated spermatheca	61 ± 4	4 of 4	0.79	None
Adult carcass	24 ± 1	4 of 4	0.30	Down
Larval CNS	120 ± 6	4 of 4	1.56	Up
Larval Salivary gland	69 ± 6	4 of 4	0.90	None
Larval midgut	46 ± 1	4 of 4	0.60	Down
Larval tubule	54 ± 3	4 of 4	0.70	None
Larval hindgut	59 ± 2	4 of 4	0.77	None
Larval fat body	43 ± 2	4 of 4	0.60	Down
Larval trachea	77 ± 7	4 of 4	1.00	None
Larval carcass	44 ± 4	4 of 4	0.57	Down
S2 cells (growing)	140 ± 7	4 of 4	1.82	Up
Whole fly	77 ± 9	4 of 4

Looking for FBgn0040009. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720