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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040020 through 18771 annotations produced 1 hits



Mediator complex subunit 21 (MED21):

Annotation Number : CG40364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040020
Gbrowse : chr3LHet:600379-601311 (-) // 100.0 //
Probeset : 1624572_a_at
Accessions : protein= NP_001015223; /// NP_001015224;, nucleotide= NM_001015223; /// NM_001015224;
Pathway : "0005634 // nucleus // inferred from electronic annotation /// 0016591 // DNA-directed RNA polymerase II
Interpro : holoenzyme // inferred from sequence or structural similarity /// 0016592 // mediator complex // inferred from direct a
FlyMine data for FBgn0040020.
TRiP has 1 RNAi stocks for FBgn0040020 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain853 234 of 4 1.90Up
Head323 204 of 4 0.70Down
Eye241 54 of 4 0.54Down
Thoracicoabdominal ganglion820 224 of 4 1.80Up
Salivary gland143 104 of 4 0.32Down
Crop148 14 of 4 0.30Down
Midgut165 24 of 4 0.40Down
Tubule153 54 of 4 0.30Down
Hindgut133 74 of 4 0.30Down
Heart87 24 of 4 0.19Down
Fat body73 54 of 4 0.16Down
Ovary1041 214 of 4 2.30Up
Testis60 44 of 4 0.10Down
Male accessory glands98 14 of 4 0.20Down
Virgin spermatheca75 34 of 4 0.17Down
Mated spermatheca87 74 of 4 0.19Down
Adult carcass97 54 of 4 0.20Down
Larval CNS597 244 of 4 1.33Up
Larval Salivary gland182 44 of 4 0.41Down
Larval midgut166 84 of 4 0.37Down
Larval tubule232 194 of 4 0.50Down
Larval hindgut186 94 of 4 0.42Down
Larval fat body124 54 of 4 0.30Down
Larval trachea305 284 of 4 0.68Down
Larval carcass163 44 of 4 0.36Down
S2 cells (growing)178 74 of 4 0.40Down
Whole fly448 304 of 4

Looking for FBgn0040020. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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