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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040022 through 18771 annotations produced 1 hits



(CG40351):

Annotation Number : CG40351
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040022
Gbrowse : chr3LHet:594457-600636 (+) // 99.91 //
Probeset : 1635854_s_at
Accessions : protein= NP_001015221; /// NP_001015222; /// NP_001104406; /// NP_001163846; /// NP_001163847; /// NP_001163848; /// NP_001163849; /// NP_001163850; /// NP_001163851;, nucleotide= NM_001015221; /// NM_001015222; /// NM_001110936; /// NM_001170375; /// NM_001170376; /// NM_001170377; /// NM_001170378; /// NM_001170379; /// NM_001170380;
Pathway : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0040022.
TRiP has 3 RNAi stocks for FBgn0040022 available for purchase.
VDRC has 4 RNAi stocks for FBgn0040022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 ± 64 of 4 2.30Up
Head115 ± 74 of 4 1.10None
Eye69 ± 44 of 4 0.68Down
Thoracicoabdominal ganglion172 ± 64 of 4 1.70Up
Salivary gland215 ± 254 of 4 2.09Up
Crop162 ± 54 of 4 1.60Up
Midgut105 ± 24 of 4 1.00None
Tubule135 ± 44 of 4 1.30Up
Hindgut124 ± 44 of 4 1.20None
Heart54 ± 54 of 4 0.52Down
Fat body125 ± 44 of 4 1.22Up
Ovary265 ± 134 of 4 2.60Up
Testis59 ± 74 of 4 0.60Down
Male accessory glands148 ± 104 of 4 1.40Up
Virgin spermatheca128 ± 184 of 4 1.25None
Mated spermatheca126 ± 134 of 4 1.22None
Adult carcass79 ± 54 of 4 0.80Down
Larval CNS256 ± 364 of 4 2.48Up
Larval Salivary gland187 ± 114 of 4 1.82Up
Larval midgut98 ± 54 of 4 0.95None
Larval tubule144 ± 144 of 4 1.40None
Larval hindgut169 ± 44 of 4 1.64Up
Larval fat body90 ± 44 of 4 0.90None
Larval trachea74 ± 134 of 4 0.72Down
Larval carcass119 ± 34 of 4 1.16None
S2 cells (growing)130 ± 104 of 4 1.27None
Whole fly103 ± 74 of 4

Looking for FBgn0040022. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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