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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040045 through 18771 annotations produced 1 hits



(CG12460):

Annotation Number : CG12460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040045
Gbrowse : chr3L:24527188-24528567 (+) // 100.0 //
Probeset : 1633874_at
Accessions : protein= NP_001036650;, nucleotide= NM_001043185;
Pathway : 0005681 // spliceosomal complex // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0040045.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 1.30None
Head3 00 of 4 1.00None
Eye1 00 of 4 0.52None
Thoracicoabdominal ganglion3 00 of 4 0.80None
Salivary gland5 20 of 4 1.35None
Crop5 10 of 4 1.50None
Midgut3 00 of 4 1.10None
Tubule6 10 of 4 1.80Up
Hindgut5 10 of 4 1.40None
Heart3 10 of 4 0.95None
Fat body3 30 of 4 0.87None
Ovary4 00 of 4 1.10None
Testis10 11 of 4 2.80Up
Male accessory glands7 20 of 4 2.10None
Virgin spermatheca5 10 of 4 1.47None
Mated spermatheca4 10 of 4 1.19None
Adult carcass6 10 of 4 1.80None
Larval CNS5 10 of 4 1.58None
Larval Salivary gland8 20 of 4 2.22None
Larval midgut4 10 of 4 1.24None
Larval tubule2 00 of 4 0.70None
Larval hindgut2 00 of 4 0.66None
Larval fat body5 20 of 4 1.50None
Larval trachea4 30 of 4 1.28None
Larval carcass6 10 of 4 1.67None
S2 cells (growing)6 10 of 4 1.68None
Whole fly3 10 of 4

Looking for FBgn0040045. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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