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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0040060 through 18771 annotations produced 1 hits


Machete (yip7):

Annotation Number : CG6457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040060
Gbrowse : chr3L:6028329-6029279 (+) // 100.0 //
Probeset : 1638661_at
Accessions : protein= NP_523944;, nucleotide= NM_079220;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0040060.
BDGP gene expression has embryonic in situ data for yip7: 6 pix of staining in 1 body parts.
Homophila reports that CG6457 is a close match (1e-12) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
BioGrid reports that CG6457 interacts with CG9868 .
VDRC has 3 RNAi stocks for FBgn0040060 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 10 of 4 0.00Down
Head48 ± 382 of 4 0.00Down
Eye42 ± 283 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.00Down
Salivary gland28 ± 81 of 4 0.01Down
Crop42 ± 192 of 4 0.00Down
Midgut5828 ± 1514 of 4 1.50Up
Tubule11 ± 20 of 4 0.00Down
Hindgut529 ± 524 of 4 0.10Down
Heart12 ± 24 of 4 0.00Down
Fat body14 ± 41 of 4 0.00Down
Ovary3 ± 00 of 4 0.00Down
Testis4 ± 30 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca7 ± 20 of 4 0.00Down
Mated spermatheca10 ± 21 of 4 0.00Down
Adult carcass73 ± 373 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.00Down
Larval Salivary gland3 ± 00 of 4 0.00Down
Larval midgut5457 ± 1724 of 4 1.45Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut27 ± 73 of 4 0.01Down
Larval fat body159 ± 1023 of 4 0.00Down
Larval trachea177 ± 3132 of 4 0.05Down
Larval carcass11 ± 30 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly3764 ± 1154 of 4

Looking for FBgn0040060. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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