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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040063 through 18771 annotations produced 1 hits



yippee interacting protein 3 (yip3):

Annotation Number : CG13549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040063
Gbrowse : chr2R:19131555-19132809 (-) // 100.0 //
Probeset : 1627847_s_at
Accessions : protein= NP_523819; /// NP_726300;, nucleotide= NM_079095; /// NM_166588;
Pathway : 0005839 // proteasome core complex // inferred from electronic annotation
Interpro : 0004298 // threonine-type endopeptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activit
FlyMine data for FBgn0040063.
BioGrid reports that CG13549 interacts with CG8671 CG2146 CG2986 CG32380 CG3584 CG7001 CG8392 .
VDRC has 3 RNAi stocks for FBgn0040063 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye4 10 of 4 0.43Down
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland3 00 of 4 0.36Down
Crop1 00 of 4 0.20Down
Midgut0 00 of 4 0.10Down
Tubule3 00 of 4 0.30Down
Hindgut0 00 of 4 0.10Down
Heart2 00 of 4 0.22Down
Fat body2 10 of 4 0.26Down
Ovary1 00 of 4 0.20Down
Testis184 224 of 419.00Up
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca2 10 of 4 0.22Down
Mated spermatheca2 10 of 4 0.27Down
Adult carcass4 20 of 4 0.40None
Larval CNS2 10 of 4 0.21Down
Larval Salivary gland49 54 of 4 5.07Up
Larval midgut0 00 of 4 0.08Down
Larval tubule1 00 of 4 0.20Down
Larval hindgut1 00 of 4 0.17Down
Larval fat body35 172 of 4 3.70None
Larval trachea1 20 of 4 0.17Down
Larval carcass3 00 of 4 0.34Down
S2 cells (growing)2 10 of 4 0.26Down
Whole fly9 13 of 4

Looking for FBgn0040063. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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