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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040064 through 18771 annotations produced 1 hits



yippee interacting protein 2 (yip2):

Annotation Number : CG4600
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040064
Gbrowse : chr2L:9915254-9917221 (+) // 100.0 //
Probeset : 1636180_at
Accessions : protein= NP_523528;, nucleotide= NM_078804;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005811 // lipid particle // inferred fr
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activi
FlyMine data for FBgn0040064.
BDGP gene expression has embryonic in situ data for yip2: 32 pix of staining in 12 body parts.
Homophila reports that CG4600 is a close match (9e-37) to human gene HADHB (NP_000174), a gene associated with Trifunctional protein deficiency, 609015 (3).
TRiP has 1 RNAi stocks for FBgn0040064 available for purchase.
VDRC has 1 RNAi stocks for FBgn0040064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain235 94 of 4 0.30Down
Head1306 654 of 4 1.60Up
Eye542 684 of 4 0.67Down
Thoracicoabdominal ganglion274 84 of 4 0.30Down
Salivary gland163 144 of 4 0.20Down
Crop1620 664 of 4 2.00Up
Midgut1151 184 of 4 1.40Up
Tubule1714 214 of 4 2.10Up
Hindgut1408 244 of 4 1.70Up
Heart1766 584 of 4 2.17Up
Fat body3103 1854 of 4 3.81Up
Ovary864 304 of 4 1.10None
Testis88 44 of 4 0.10Down
Male accessory glands173 244 of 4 0.20Down
Virgin spermatheca3270 1484 of 4 4.02Up
Mated spermatheca3263 2204 of 4 4.01Up
Adult carcass1927 1144 of 4 2.40Up
Larval CNS433 334 of 4 0.53Down
Larval Salivary gland1512 2514 of 4 1.86None
Larval midgut1450 814 of 4 1.78Up
Larval tubule1734 704 of 4 2.10Up
Larval hindgut872 714 of 4 1.07None
Larval fat body4153 5084 of 4 5.10Up
Larval trachea748 634 of 4 0.92None
Larval carcass974 174 of 4 1.20Up
S2 cells (growing)830 84 of 4 1.02None
Whole fly814 334 of 4

Looking for FBgn0040064. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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