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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0040068 through 18771 annotations produced 2 hits



vav (vav):

Annotation Number : CG7893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040068
Gbrowse : chrX:19155863-19167312 (+) // 100.0 //
Probeset : 1635592_at
Accessions : protein= NP_001097030; /// NP_573372; /// NP_728235;, nucleotide= NM_001103560; /// NM_133144; /// NM_167642;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 //
FlyMine data for FBgn0040068.
BDGP gene expression has embryonic in situ data for vav: 28 pix of staining in 20 body parts.
Homophila reports that CG7893 is a close match (5e-13) to human gene ARHGEF10;KIAA0294 (NP_055444), a gene associated with Slowed nerve conduction velocity, AD, 608236 (3).
TRiP has 1 RNAi stocks for FBgn0040068 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 54 of 4 5.00Up
Head73 74 of 4 2.00Up
Eye72 44 of 4 1.95Up
Thoracicoabdominal ganglion225 154 of 4 6.10Up
Salivary gland69 64 of 4 1.87Up
Crop63 24 of 4 1.70Up
Midgut49 34 of 4 1.30Up
Tubule46 24 of 4 1.20Up
Hindgut81 24 of 4 2.20Up
Heart57 44 of 4 1.56Up
Fat body50 84 of 4 1.35Up
Ovary29 14 of 4 0.80Down
Testis13 13 of 4 0.40Down
Male accessory glands155 74 of 4 4.20Up
Virgin spermatheca60 34 of 4 1.62Up
Mated spermatheca67 84 of 4 1.80Up
Adult carcass47 34 of 4 1.30Up
Larval CNS199 114 of 4 5.37Up
Larval Salivary gland76 64 of 4 2.05Up
Larval midgut69 54 of 4 1.85Up
Larval tubule59 54 of 4 1.60Up
Larval hindgut85 34 of 4 2.29Up
Larval fat body44 44 of 4 1.20None
Larval trachea55 54 of 4 1.48Up
Larval carcass94 64 of 4 2.55Up
S2 cells (growing)109 54 of 4 2.93Up
Whole fly37 14 of 4



vav (vav):

Annotation Number : CG7893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040068
Gbrowse : chrX:19155863-19166124 (+) // 100.0 //
Probeset : 1636614_a_at
Accessions : protein= NP_001097030; /// NP_573372; /// NP_728235;, nucleotide= NM_001103560; /// NM_133144; /// NM_167642;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005085 // guanyl-nucleotide exchange factor activity // inferred from sequence or structural similarity /// 0005085 //
FlyMine data for FBgn0040068.
BDGP gene expression has embryonic in situ data for vav: 28 pix of staining in 20 body parts.
Homophila reports that CG7893 is a close match (5e-13) to human gene ARHGEF10;KIAA0294 (NP_055444), a gene associated with Slowed nerve conduction velocity, AD, 608236 (3).
TRiP has 1 RNAi stocks for FBgn0040068 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 04 of 4 1.10None
Head50 54 of 4 0.90None
Eye40 14 of 4 0.72None
Thoracicoabdominal ganglion40 14 of 4 0.70None
Salivary gland82 34 of 4 1.46Up
Crop49 14 of 4 0.90None
Midgut54 34 of 4 1.00None
Tubule40 34 of 4 0.70Down
Hindgut60 54 of 4 1.10None
Heart38 24 of 4 0.69None
Fat body62 94 of 4 1.12None
Ovary128 64 of 4 2.30Up
Testis27 24 of 4 0.50Down
Male accessory glands74 44 of 4 1.30None
Virgin spermatheca32 24 of 4 0.58Down
Mated spermatheca39 34 of 4 0.70None
Adult carcass51 64 of 4 0.90None
Larval CNS40 44 of 4 0.72None
Larval Salivary gland59 74 of 4 1.06None
Larval midgut45 14 of 4 0.81None
Larval tubule34 24 of 4 0.60Down
Larval hindgut48 44 of 4 0.87None
Larval fat body29 44 of 4 0.50Down
Larval trachea41 34 of 4 0.74None
Larval carcass45 04 of 4 0.80None
S2 cells (growing)89 64 of 4 1.60Up
Whole fly56 64 of 4

Looking for FBgn0040068. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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